• Home
  • Features
  • Pricing
  • Docs
  • Announcements
  • Sign In

EdinburghGenomics / Analysis-Driver
72%
master: 80%

Build:
Build:
LAST BUILD BRANCH: v0.26.1
DEFAULT BRANCH: master
Repo Added 05 Jun 2017 10:12AM UTC
Files 45
Badge
Embed ▾
README BADGES
x

If you need to use a raster PNG badge, change the '.svg' to '.png' in the link

Markdown

Textile

RDoc

HTML

Rst

LAST BUILD ON BRANCH early_alignment
branch: early_alignment
CHANGE BRANCH
x
Reset
  • early_alignment
  • #374_include_coverage
  • 231_bcl2fastq2.20
  • 345_gatk4_trio_check
  • 356_picard2.18
  • 363_file_check
  • 367_species_in_reporting
  • 377_gatk4_pipeline
  • 382_check_bcl_exists_for_cycle
  • 385_deteminisic_samplesheet
  • 390_pipeline_objects
  • 394_limit_LIMS_rest_api
  • 396_filter_qc
  • 405_fix_IDT_barcode
  • 408_add_gatk3.8
  • 411_417_split_demultiplexing_per_lane
  • 415_fix_fastqc
  • Change_Sample_Ready_Requirements
  • ContaminationCheck_KE
  • Fix_gatk_genotype
  • Link_Creation_Fix
  • Release_0.26
  • Release_v0.25.1
  • Release_v0.25.2
  • VB8_fix_execute
  • VB8_validation_corrections
  • align_run_elements
  • asana_update
  • bcbio_no_cleanup_integrationtest
  • early_align_run_aborted
  • enforce_fastq_merge
  • exception_in_main_proc
  • faster_varcall_QC
  • fastq_filterer_fixes
  • fix_bcl2fastq
  • fix_build
  • fix_duplicated_unmapped
  • fix_insert_sizes_type
  • fix_integration_tests
  • fix_lims_ntf
  • fix_missing_gvcf
  • fix_project_bug
  • fix_run_element_mapping
  • fix_run_qc
  • gatk4
  • genotype_gvcfs_memory
  • integrate_lims
  • integrate_lims2
  • integration_test
  • interop_metrics
  • issue/231/bcl2fastq2.20
  • load_output_conf
  • master
  • mwham_develop
  • mwham_refactor
  • nonhuman_variantcalling
  • overwrite_tabix_bgzip
  • pdp_pool_fix
  • project_on_valid_project
  • project_process_MD5
  • project_process_bugfix
  • rapid_analysis
  • record_data_source
  • refactor
  • relatedness_refactor
  • remove_phix
  • resume
  • review_trigger
  • sample_aggregate_defaults
  • sample_datasets_fix
  • sex
  • test_gatk3.8
  • tool_versions
  • trios_relatedness
  • update_core
  • update_req_yield
  • user_prep_libraries
  • v0.17
  • v0.18
  • v0.18.1
  • v0.19
  • v0.19.1
  • v0.19.2
  • v0.20
  • v0.20.1
  • v0.21
  • v0.22
  • v0.22.1
  • v0.23
  • v0.23.1
  • v0.24
  • v0.24.1
  • v0.25
  • v0.25.1
  • v0.25.2
  • v0.25.3
  • v0.26
  • v0.26.1
  • vb9_fixes

pending completion
2303

Pull #368

travis-ci

web-flow
merge master and resolve conflicts
Pull Request #368: Early alignment in Run processing

49 of 49 new or added lines in 3 files covered. (100.0%)

2566 of 3541 relevant lines covered (72.47%)

1.45 hits per line

Relevant lines Covered
Build:
Build:
3541 RELEVANT LINES 2566 COVERED LINES
1.45 HITS PER LINE
Source Files on early_alignment
  • List 0
  • Changed 4
  • Source Changed 4
  • Coverage Changed 4
Coverage ∆ File Lines Relevant Covered Missed Hits/Line

Recent builds

Builds Branch Commit Type Ran Committer Via Coverage
2303 early_alignment merge master and resolve conflicts Pull #368 17 Jan 2019 12:35PM UTC web-flow travis-ci pending completion  
2302 early_alignment merge master and resolve conflicts push 17 Jan 2019 12:34PM UTC tcezard travis-ci pending completion  
2285 early_alignment rename variables to more descriptive names Pull #368 14 Jan 2019 12:02PM UTC web-flow travis-ci pending completion  
2284 early_alignment rename variables to more descriptive names push 14 Jan 2019 12:01PM UTC tcezard travis-ci pending completion  
2246 early_alignment remove extra space in stage name push 11 Dec 2018 09:02PM UTC tcezard travis-ci pending completion  
2243 early_alignment fix integration test push 11 Dec 2018 03:14PM UTC tcezard travis-ci pending completion  
2242 early_alignment sum the length of index length return 0 for every step push 11 Dec 2018 01:21PM UTC tcezard travis-ci pending completion  
2241 early_alignment replace illuminate with interop patch call to interop in integration tests new unit tests push 11 Dec 2018 10:57AM UTC tcezard travis-ci pending completion  
2239 early_alignment Move the postdemultiplexing run to start during the run new HalfRun demultiplexing stage Uses interop library to detect the current cycle extracted remove QC metrics that risks being wrong. push 10 Dec 2018 04:31PM UTC tcezard travis-ci pending completion  
See All Builds (829)
  • Repo on GitHub
STATUS · Troubleshooting · Open an Issue · Sales · Support · CAREERS · ENTERPRISE · START FREE · SCHEDULE DEMO
ANNOUNCEMENTS · TWITTER · TOS & SLA · Supported CI Services · What's a CI service? · Automated Testing

© 2025 Coveralls, Inc