EdinburghGenomics / Analysis-Driver

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LAST BUILD ON BRANCH fix_lims_ntf

branch: fix_lims_ntf

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• fix_lims_ntf
• #374_include_coverage
• 231_bcl2fastq2.20
• 345_gatk4_trio_check
• 356_picard2.18
• 363_file_check
• 367_species_in_reporting
• 377_gatk4_pipeline
• 382_check_bcl_exists_for_cycle
• 385_deteminisic_samplesheet
• 390_pipeline_objects
• 394_limit_LIMS_rest_api
• 396_filter_qc
• 405_fix_IDT_barcode
• 408_add_gatk3.8
• 411_417_split_demultiplexing_per_lane
• 415_fix_fastqc
• Change_Sample_Ready_Requirements
• ContaminationCheck_KE
• Fix_gatk_genotype
• Link_Creation_Fix
• Release_0.26
• Release_v0.25.1
• Release_v0.25.2
• VB8_fix_execute
• VB8_validation_corrections
• align_run_elements
• asana_update
• bcbio_no_cleanup_integrationtest
• early_align_run_aborted
• early_alignment
• enforce_fastq_merge
• exception_in_main_proc
• faster_varcall_QC
• fastq_filterer_fixes
• fix_bcl2fastq
• fix_build
• fix_duplicated_unmapped
• fix_insert_sizes_type
• fix_integration_tests
• fix_missing_gvcf
• fix_project_bug
• fix_run_element_mapping
• fix_run_qc
• gatk4
• genotype_gvcfs_memory
• integrate_lims
• integrate_lims2
• integration_test
• interop_metrics
• issue/231/bcl2fastq2.20
• load_output_conf
• master
• mwham_develop
• mwham_refactor
• nonhuman_variantcalling
• overwrite_tabix_bgzip
• pdp_pool_fix
• project_on_valid_project
• project_process_MD5
• project_process_bugfix
• rapid_analysis
• record_data_source
• refactor
• relatedness_refactor
• remove_phix
• resume
• review_trigger
• sample_aggregate_defaults
• sample_datasets_fix
• sex
• test_gatk3.8
• tool_versions
• trios_relatedness
• update_core
• update_req_yield
• user_prep_libraries
• v0.17
• v0.18
• v0.18.1
• v0.19
• v0.19.1
• v0.19.2
• v0.20
• v0.20.1
• v0.21
• v0.22
• v0.22.1
• v0.23
• v0.23.1
• v0.24
• v0.24.1
• v0.25
• v0.25.1
• v0.25.2
• v0.25.3
• v0.26
• v0.26.1
• vb9_fixes

Build # 1971

Build Type

push

travis-ci

Committed by katieemelianova

Commit Message

Change error catching in client
Correct error in assigning next step for sample in lims
Update tests

Run Details

2305 of 3248 relevant lines covered (70.97%)

1.42 hits per line