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EdinburghGenomics / Analysis-Driver
72%
master: 80%

Build:
Build:
LAST BUILD BRANCH: v0.26.1
DEFAULT BRANCH: master
Repo Added 05 Jun 2017 10:12AM UTC
Files 45
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LAST BUILD ON BRANCH nonhuman_variantcalling
branch: nonhuman_variantcalling
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  • nonhuman_variantcalling
  • #374_include_coverage
  • 231_bcl2fastq2.20
  • 345_gatk4_trio_check
  • 356_picard2.18
  • 363_file_check
  • 367_species_in_reporting
  • 377_gatk4_pipeline
  • 382_check_bcl_exists_for_cycle
  • 385_deteminisic_samplesheet
  • 390_pipeline_objects
  • 394_limit_LIMS_rest_api
  • 396_filter_qc
  • 405_fix_IDT_barcode
  • 408_add_gatk3.8
  • 411_417_split_demultiplexing_per_lane
  • 415_fix_fastqc
  • Change_Sample_Ready_Requirements
  • ContaminationCheck_KE
  • Fix_gatk_genotype
  • Link_Creation_Fix
  • Release_0.26
  • Release_v0.25.1
  • Release_v0.25.2
  • VB8_fix_execute
  • VB8_validation_corrections
  • align_run_elements
  • asana_update
  • bcbio_no_cleanup_integrationtest
  • early_align_run_aborted
  • early_alignment
  • enforce_fastq_merge
  • exception_in_main_proc
  • faster_varcall_QC
  • fastq_filterer_fixes
  • fix_bcl2fastq
  • fix_build
  • fix_duplicated_unmapped
  • fix_insert_sizes_type
  • fix_integration_tests
  • fix_lims_ntf
  • fix_missing_gvcf
  • fix_project_bug
  • fix_run_element_mapping
  • fix_run_qc
  • gatk4
  • genotype_gvcfs_memory
  • integrate_lims
  • integrate_lims2
  • integration_test
  • interop_metrics
  • issue/231/bcl2fastq2.20
  • load_output_conf
  • master
  • mwham_develop
  • mwham_refactor
  • overwrite_tabix_bgzip
  • pdp_pool_fix
  • project_on_valid_project
  • project_process_MD5
  • project_process_bugfix
  • rapid_analysis
  • record_data_source
  • refactor
  • relatedness_refactor
  • remove_phix
  • resume
  • review_trigger
  • sample_aggregate_defaults
  • sample_datasets_fix
  • sex
  • test_gatk3.8
  • tool_versions
  • trios_relatedness
  • update_core
  • update_req_yield
  • user_prep_libraries
  • v0.17
  • v0.18
  • v0.18.1
  • v0.19
  • v0.19.1
  • v0.19.2
  • v0.20
  • v0.20.1
  • v0.21
  • v0.22
  • v0.22.1
  • v0.23
  • v0.23.1
  • v0.24
  • v0.24.1
  • v0.25
  • v0.25.1
  • v0.25.2
  • v0.25.3
  • v0.26
  • v0.26.1
  • vb9_fixes

pending completion
2106

push

travis-ci

katieemelianova
Uopdate integration test stages expected

2417 of 3346 relevant lines covered (72.24%)

1.44 hits per line

Relevant lines Covered
Build:
Build:
3346 RELEVANT LINES 2417 COVERED LINES
1.44 HITS PER LINE
Source Files on nonhuman_variantcalling
  • List 0
  • Changed 5
  • Source Changed 5
  • Coverage Changed 4
Coverage ∆ File Lines Relevant Covered Missed Hits/Line

Recent builds

Builds Branch Commit Type Ran Committer Via Coverage
2106 nonhuman_variantcalling Uopdate integration test stages expected push 22 Mar 2018 11:36AM UTC katieemelianova travis-ci pending completion  
2102 nonhuman_variantcalling Merge branch 'master' into nonhuman_variantcalling push 28 Feb 2018 12:25PM UTC katieemelianova travis-ci pending completion  
2099 nonhuman_variantcalling Correct outfile names push 28 Feb 2018 12:21PM UTC katieemelianova travis-ci pending completion  
2093 nonhuman_variantcalling remove dbsnp_file parameter from variant calling call to HaplotypeCaller push 26 Feb 2018 04:06PM UTC katieemelianova travis-ci pending completion  
2090 nonhuman_variantcalling remove instamncesof giving dataset parameter twice in qc pipeline push 26 Feb 2018 01:04PM UTC katieemelianova travis-ci pending completion  
2070 nonhuman_variantcalling Merge branch 'master' into nonhuman_variantcalling # Conflicts: # requirements.txt push 14 Feb 2018 03:10PM UTC katieemelianova travis-ci pending completion  
2065 nonhuman_variantcalling Add __init__ file to integration tests push 14 Feb 2018 09:40AM UTC katieemelianova travis-ci pending completion  
2045 nonhuman_variantcalling Merge branch 'master' into nonhuman_variantcalling push 07 Feb 2018 11:47AM UTC katieemelianova travis-ci pending completion  
2038 nonhuman_variantcalling correct indentation error leading to dbsnp error in Haplotype Caller push 06 Feb 2018 09:36AM UTC katieemelianova travis-ci pending completion  
2035 nonhuman_variantcalling Add filter snp vcfstats file for tests Fix tests push 05 Feb 2018 10:50AM UTC katieemelianova travis-ci pending completion  
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