broadinstitute / hellbender / 689

Builds Branch Commit Type Ran Committer Via Coverage
689 lb_fix_required_collections Fix for #309 Argument parser was incorrectly marking collection arguments as optional. To maintain campatibility with picard style arguments it marks any argument with a default value as optional. This was incorrectly flagging empty lists as havin... push lbergelson travis-pro pending completion   set done
687 master Merge pull request #308 from broadinstitute/dr_expose_feature_headers Expose Feature headers, and provide convenient VCFHeader access in VariantWalker push akiezun travis-pro pending completion   set done
686 master Expose Feature headers, and provide convenient VCFHeader access in VariantWalker -Within a tool, Feature headers can now be obtained from a FeatureContext within apply(), or from the inherited method getHeaderForFeatures() outside of apply() (eg... Pull #308 droazen travis-pro pending completion   set done
685 dr_expose_feature_headers Expose Feature headers, and provide convenient VCFHeader access in VariantWalker -Within a tool, Feature headers can now be obtained from a FeatureContext within apply(), or from the inherited method getHeaderForFeatures() outside of apply() (eg... push droazen travis-pro pending completion   set done
684 master Expose Feature headers, and provide convenient VCFHeader access in VariantWalker -The header for a given FeatureInput can now be retrieved by tools through FeatureContext, and by engine classes via FeatureManager/FeatureDataSource. -Added conve... Pull #308 droazen travis-pro pending completion   set done
683 dr_expose_feature_headers Expose Feature headers, and provide convenient VCFHeader access in VariantWalker -The header for a given FeatureInput can now be retrieved by tools through FeatureContext, and by engine classes via FeatureManager/FeatureDataSource. -Added conve... push droazen travis-pro pending completion   set done
682 dr_expose_feature_headers Expose Feature headers, and provide convenient VCFHeader access in VariantWalker -The header for a given FeatureInput can now be retrieved by tools through FeatureContext, and by engine classes via FeatureManager/FeatureDataSource. -Added conve... push droazen travis-pro pending completion   set done
681 dr_expose_feature_headers Expose Feature headers, and provide convenient VCFHeader access in VariantWalker -The header for a given FeatureInput can now be retrieved by tools through FeatureContext, and by engine classes via FeatureManager/FeatureDataSource. -Added conve... push droazen travis-pro pending completion   set done
680 dr_expose_feature_headers Expose Feature headers, and provide convenient VCFHeader access in VariantWalker -The header for a given FeatureInput can now be retrieved by tools through FeatureContext, and by engine classes via FeatureManager/FeatureDataSource. -Added conve... push droazen travis-pro pending completion   set done
679 dr_expose_feature_headers Expose Feature headers, and provide convenient VCFHeader access in VariantWalker -The header for a given FeatureInput can now be retrieved by tools through FeatureContext, and by engine classes via FeatureManager/FeatureDataSource. -Added conve... push droazen travis-pro pending completion   set done
678 dr_expose_feature_headers Expose Feature headers in FeatureDataSource and FeatureManager, and provide convenient VCFHeader access in VariantWalker Requested by Adam push droazen travis-pro pending completion   set done
677 ak_simplify_covariates simplify and remove useless covariate code push akiezun travis-pro pending completion   set done
675 master Merge pull request #307 from broadinstitute/dr_disable_parallel_tests Disable test suite parallelism push akiezun travis-pro pending completion   set done
674 master Disable test suite parallelism We've been experiencing intermittent, inexplicable failures in the test suite. In a recent travis build, an assertion in MisencodedBaseQualityReadTransformerUnitTest failed for no reason at all, then passed on the r... Pull #307 droazen travis-pro pending completion   set done
673 dr_disable_parallel_tests Disable test suite parallelism We've been experiencing intermittent, inexplicable failures in the test suite. In a recent travis build, an assertion in MisencodedBaseQualityReadTransformerUnitTest failed for no reason at all, then passed on the r... push droazen travis-pro pending completion   set done