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broadinstitute / hellbender / 685
75%
master: 81%

Build:
Build:
LAST BUILD BRANCH: dr_disentangle_spark_and_dataflow
DEFAULT BRANCH: master
Ran 15 Mar 2015 06:34PM UTC
Jobs 1
Files 218
Run time 2min
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Expose Feature headers, and provide convenient VCFHeader access in VariantWalker

-Within a tool, Feature headers can now be obtained from a FeatureContext within apply(),
 or from the inherited method getHeaderForFeatures() outside of apply() (eg., in onTraversalStart()).

-VariantWalkers have the additional inherited convenience method getHeaderForVariants()
 that returns the header for the driving source of variants typed as a VCFHeader.

-Engine-facing classes FeatureManager and FeatureDataSource now also expose headers.

Requested by Adam

12 of 12 new or added lines in 5 files covered. (100.0%)

10433 of 13909 relevant lines covered (75.01%)

0.75 hits per line

New Missed Lines in Diff

Lines Coverage ∆ File
1
100.0
src/main/java/org/broadinstitute/hellbender/engine/GATKTool.java
4
100.0
src/main/java/org/broadinstitute/hellbender/engine/VariantWalker.java

Uncovered Existing Lines

Lines Coverage ∆ File
2
100.0
src/main/java/org/broadinstitute/hellbender/engine/FeatureDataSource.java
2
100.0
src/main/java/org/broadinstitute/hellbender/engine/VariantWalker.java
8
100.0
src/main/java/org/broadinstitute/hellbender/engine/FeatureContext.java
9
100.0
src/main/java/org/broadinstitute/hellbender/engine/FeatureManager.java
Jobs
ID Job ID Ran Files Coverage
1 685.1 (TERM=dumb) 15 Mar 2015 06:34PM UTC 0
75.01
Travis Job 685.1
Source Files on build 685
Detailed source file information is not available for this build.
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