GavinHuttley / cogent3 / 5021822293

Builds Branch Commit Type Ran Committer Via Coverage
5021822293 develop ENH: test Alignment.alignment_quality() uses the new quality apps push Gavin Huttley github pending completion   set done
5020259394 develop DOC: partial update of docs to new API push Gavin Huttley github pending completion   set done
5020045384 develop DOC: updated doc to use pdist push Gavin Huttley github pending completion   set done
5020005165 develop API: renamed percent identity calculator push Gavin Huttley github pending completion   set done
5019178459 develop DEV: describe new arguments in tree_align push Gavin Huttley github pending completion   set done
5001968006 develop TST: attempt to fix failing test caused by windows line endings push Gavin Huttley github pending completion   set done
4816067847 develop Merge pull request #1386 from cogent3/dependabot/pip/numpy-1.24.3 push GitHub github pending completion   set done
4783099491 develop STY: pre-commit linting with black and isort push GavinHuttley github pending completion   set done
4780686749 develop MAINT: deprecated_args() works with single or multiple discontinued args push Gavin Huttley github pending completion   set done
4761977067 develop Merge pull request #1374 from GavinHuttley/develop push GitHub github pending completion   set done
4750914795 develop DOC: fixed misleading docstring om MolType push Gavin Huttley github pending completion   set done
4716681762 develop ENH: added include_stop argument to NucleicAcidSequence.get_translation() push Gavin Huttley github pending completion   set done
4695917397 develop DEP: Alphabet.counts, because it should not exist push Gavin Huttley github pending completion   set done
4695850076 develop MAINT: explicit type hint for Alphabet push Gavin Huttley github pending completion   set done
4695568223 develop DEP: mark Alphabet.adapt_motif_probs as deprecated push Gavin Huttley github
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