bioperl / bioperl-live / 922

Builds Branch Commit Type Ran Committer Via Coverage
922 master t/Annotation/Annotation.t: remove test for Bio::SeqFeature::Annotated Move testing to Bio-FeatureIO distribution because that's where Bio::SeqFeature::Annotated is. push carandraug travis-ci pending completion   set done
921 master Bio/Tools/Run/Phylo/PhyloBase.pm: bring base class from BioPerl-Run. Imported from bioperl-run b8d71de5d push carandraug travis-ci pending completion   set done
920 master Bio/Tools/Phylo/Gumby.pm: move to its own distribution push carandraug travis-ci pending completion   set done
919 master DB/SeqFeature/Store/berkeleydb3.pm: fix errors so it compiles (issue #284) push carandraug travis-ci pending completion   set done
918 master Adjust tests indirectly making use of Bio::AlignIO::stockholm (issue #288) * t/AlignIO/AlignIO.t: remove tests for stockholm. The distribution with the module has this tests. * t/SeqTools/GuessSeqFormat.t: make it depenndent on presence of the... push carandraug travis-ci pending completion   set done
916 master bp_process_wormbase: move program to new Bio-DB-Ace distribution While this script does not actually use the Bio-DB-Ace modules, it's still dependent on the Ace distribution and is an interface to ACeDB servers, and makes sense in that distributi... push carandraug travis-ci pending completion   set done
915 master bp_netinstall: remove out of date program OUt of date. Downloads 1.6 or tarball from github releases. Has flags for svn. This type of scripts is really bad practice. push carandraug travis-ci pending completion   set done
914 master Move modules dependent on Bio::Ext::Align into defunct bioperl-ext This modules are an interface to Bio::Ext::Align which is part of the bioperl-ext repo and is now defunct (seems to not be indexed on CPAN at all). So move them there so they can... push carandraug travis-ci pending completion   set done
913 master Bio::DB::Expression: move to defunct bioperl-microarray These modules were designed to work with the Bio::Expression modules which were moved to the inactive bioperl-microarray suite. Move this two now as well, only 9 years later. They don't ev... push carandraug travis-ci pending completion   set done
912 master maint: 644 permissions for almost all files All files permissions set to 644. Exception are scripts in maintenance and travis_scripts (all set to 755) since they are meant to be run after clone. Even stuff in scripts/ is set to 644 because it's... push carandraug travis-ci pending completion   set done
911 master maint: remove maintainer out of date files * BUGS: very much out of date. Important notes should go on the Changes files. For not fixed issues we have a public bug tracker. * DEPENDENCIES: not only it is out of date, this file can be genera... push carandraug travis-ci pending completion   set done
910 master ide: remove module templates - no longer needed after Pod::Weaver We are moving everything to use dist::zilla and we have our own Pod::Weaver configuration so we no longer need such template. push carandraug travis-ci pending completion   set done
908 master maint: remove bioperl-mode release tarballs from version control push carandraug travis-ci pending completion   set done
907 master Bio::Index::Abstract->_type_and_version: check type before version (issue #281) Because each index uses its own version number, there's no point in checking the version number before we know the type is correct. So test type first, and only then... push carandraug travis-ci pending completion   set done
906 master t/LocalDB/Index/BlastTable.t: use tempdir to avoid clashes in parallel (issue #281) Like 926dbeb0f533b39, use tempdir so that files from Index.t do not clash with the files created by this test. push carandraug travis-ci pending completion   set done