broadinstitute / gamgee / 1449

Builds Branch Commit Type Ran Committer Via Coverage
1449 master Check for missing variant in MultipleVariantIterator - important if one of the inputs is a blank VCF Pull #385 kgururaj travis-ci pending completion   set done
1448 intel_multi_iterator_fix Check for missing variant in MultipleVariantIterator - important if one of the inputs is a blank VCF push Karthik Gururaj travis-ci pending completion   set done
1447 intel_var_header_merger 1. Added VariantHeaderMerger and MergedVCFLUT for fast field look up between input VCFs and merged VCF. 2. VariantHeaderMerger accepts both shared_ptr<bcf_hdr_t> and VariantHeader& as inputs. To do this, VariantHeaderMerger is now a friend of Vari... push Karthik Gururaj travis-ci pending completion   set done
1447 master 1. Added VariantHeaderMerger and MergedVCFLUT for fast field look up between input VCFs and merged VCF. 2. VariantHeaderMerger accepts both shared_ptr<bcf_hdr_t> and VariantHeader& as inputs. To do this, VariantHeaderMerger is now a friend of Vari... Pull #376 kgururaj travis-ci pending completion   set done
1446 intel_var_header_merger 1. Created functions get_raw_merged_header() and get_merged_header() in VariantHeaderMerger 2. Move constructor, = for VariantHeaderMerger - disable deep copy constructor, = push Karthik Gururaj travis-ci pending completion   set done
1446 master 1. Created functions get_raw_merged_header() and get_merged_header() in VariantHeaderMerger 2. Move constructor, = for VariantHeaderMerger - disable deep copy constructor, = Pull #376 kgururaj travis-ci pending completion   set done
1445 master Merge pull request #383 from broadinstitute/dr_vb_auto_encode_genotypes Encode genotypes automatically in VariantBuilder instead of requiring the client to call Genotype::encode_genotype() push jmthibault79 travis-ci pending completion   set done
1444 master MVI and RBSVI now output pairs with indices - Made MVI() explicitly default - added some consts and refs to tests Pull #384 jmthibault79 travis-ci pending completion   set done
1442 master Encode genotypes automatically in VariantBuilder instead of requiring the client to call Genotype::encode_genotype() -VariantBuilder genotype setters now call appropriate Genotype::encode_genotype() function for you. -Updated tests/documentation... Pull #383 droazen travis-ci pending completion   set done
1441 dr_vb_auto_encode_genotypes Encode genotypes automatically in VariantBuilder instead of requiring the client to call Genotype::encode_genotype() -VariantBuilder genotype setters now call appropriate Genotype::encode_genotype() function for you. -Updated tests/documentation... push droazen travis-ci pending completion   set done
1440 master Merge pull request #382 from broadinstitute/jt_unsigned Fix for signed/unsigned comparisons (by Karthik) push droazen travis-ci pending completion   set done
1439 master Fix for signed/unsigned comparisons (by Karthik) Pull #382 jmthibault79 travis-ci pending completion   set done
1438 jt_unsigned Fix for signed/unsigned comparisons (by Karthik) push jmthibault79 travis-ci pending completion   set done
1437 master 1. Edited code dealing with field-idx to user defined enum in VariantHeaderMerger. Another LUT stores the mapping (instead of vector). Updated comments with information about how to use this feature 2. Added test case for field-enum mapping Pull #376 kgururaj travis-ci pending completion   set done
1437 intel_var_header_merger 1. Edited code dealing with field-idx to user defined enum in VariantHeaderMerger. Another LUT stores the mapping (instead of vector). Updated comments with information about how to use this feature 2. Added test case for field-enum mapping push Karthik Gururaj travis-ci pending completion   set done