broadinstitute / gamgee / 1386

Builds Branch Commit Type Ran Committer Via Coverage
1386 master Prevent vector end values from getting transformed during Genotype encoding, and detect invalid values Previously we were incorrectly encoding vector end values in Genotype::encode_genotype(). Now vector end values are skipped, and invalid values... Pull #369 droazen travis-ci pending completion   set done
1384 dr_fix_genotype_encoding_of_vector_ends Prevent vector end values from getting transformed during Genotype encoding, and detect invalid values Previously we were incorrectly encoding vector end values in Genotype::encode_genotype(). Now vector end values are skipped, and invalid values... push droazen travis-ci pending completion   set done
1385 master operators ++ and -- in IndividualFieldValue iterator should not return anything. Expecting a return may cause access to out of bounds memory access. Pull #368 kgururaj travis-ci pending completion   set done
1383 intel_individual_field_value_iterator_increment operators ++ and -- in IndividualFieldValue iterator should not return anything. Expecting a return may cause access to out of bounds memory access. push Karthik Gururaj travis-ci pending completion   set done
1381 master Merge pull request #367 from broadinstitute/jt_pending_vector Change m_pending_variants to a vector push jmthibault79 travis-ci pending completion   set done
1380 master Change m_pending_variants to a vector Pull #367 jmthibault79 travis-ci pending completion   set done
1379 jt_pending_vector Change m_pending_variants to a vector push jmthibault79 travis-ci pending completion   set done
1378 master Change shared pointer copy to auto reference Pull #367 jmthibault79 travis-ci pending completion   set done
1377 jt_pending_vector Change shared pointer copy to auto reference push jmthibault79 travis-ci pending completion   set done
1376 master Change m_pending_variants to a vector Pull #367 jmthibault79 travis-ci pending completion   set done
1375 jt_pending_vector Change m_pending_variants to a vector push jmthibault79 travis-ci pending completion   set done
1374 intel_individual_field_value_iterator_increment operators ++ and -- in IndividualFieldValue iterator should not return anything. Expecting a return may cause access to out of bounds memory access. push Karthik Gururaj travis-ci pending completion   set done
1373 master Merge pull request #364 from broadinstitute/dr_remove_obsolete_call_in_merge_variant_headers Remove obsolete call in merge_variant_headers() push droazen travis-ci pending completion   set done
1369 dr_remove_obsolete_call_in_merge_variant_headers Remove obsolete call in merge_variant_headers() Now that htslib expects us to sync headers manually, we don't need to pass in a nullptr when we're done adding samples to a header Resolves #363 push droazen travis-ci pending completion   set done
1370 master Remove obsolete call in merge_variant_headers() Now that htslib expects us to sync headers manually, we don't need to pass in a nullptr when we're done adding samples to a header Resolves #363 Pull #364 droazen travis-ci pending completion   set done