googlegenomics / gcp-variant-transforms / 1733

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travis-ci

Add support for bgzf. (#484)

Add support for reading of bgzf.
- If the index file is not present, use fusion break to speed up the pipeline.
- Otherwise, parse the index file and read the bgzf in parallel.
- The BGZF can end with .gz or .bgz, and must be in GCS.
- The index file is required to be in the same path as bgzf ending with .tbi.
- Only PyVCF Parser is supported.

339 of 339 new or added lines in 10 files covered. (100.0%)

7415 of 8334 relevant lines covered (88.97%)

0.89 hits per line