googlegenomics / gcp-variant-transforms / 1748
89%
master: 89%

LAST BUILD BRANCH: pysam
DEFAULT BRANCH: master
Ran
Jobs 1
Files 119
Run time 8s
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1748

Pull #493

travis-ci

web-flow 
Create a sample info table
- Use flag --create_sample_info_table to create this table.
- The table contains sample id and the file path.
- The sample id is also added into the variant record.
- Ignore sample id column for BQ to VCF pipeline.
Pull Request #493: Create a sample info table

185 of 185 new or added lines in 18 files covered. (100.0%)

7846 of 8817 relevant lines covered (88.99%)

0.89 hits per line

New Missed Lines in Diff

Lines Coverage ∆ File
1
96.03
 -0.53% gcp_variant_transforms/libs/bigquery_vcf_data_converter.py
2
75.54
 -0.78% gcp_variant_transforms/options/variant_transform_options.py
4
89.88
 -1.99% gcp_variant_transforms/beam_io/vcfio.py
4
83.94
 -0.48% gcp_variant_transforms/libs/bigquery_util.py
5
76.19
 gcp_variant_transforms/transforms/sample_info_to_bigquery.py
8
32.59
 -0.43% gcp_variant_transforms/vcf_to_bq.py
9
68.42
 -3.72% gcp_variant_transforms/pipeline_common.py

Uncovered Existing Lines

Lines Coverage ∆ File
1
32.59
 -0.43% gcp_variant_transforms/vcf_to_bq.py
1
89.88
 -1.99% gcp_variant_transforms/beam_io/vcfio.py
Jobs
ID Job ID Ran Files Coverage
1 1748.1 119
88.99
 Travis Job 1748.1
Source Files on build 1748