MikkelSchubert / adapterremoval / #102

Builds Branch Commit Type Ran Committer Via Coverage
#102 master support normalizing (merged) reverse inserts (#128) This implements part of #68 push web-flow travis-ci
67.13
#101 master add meta-data class for read serialization (#127) This simplifies passing of additional information (to be added) that influences how reads are serialized. The read_type enum is further more expanded, allowing the file_type to be derived from th... push web-flow travis-ci
67.19
#100 master use two characters when escaping unprintable chars (#126) push web-flow travis-ci
65.4
#99 master replace default catch2 string rendering (#125) Detect if strings contain unprintable characters or whitespace that cannot easily be distinguished, and escape everything if that is the case push web-flow travis-ci
65.4
#98 master minor improvemens to buffer class (#124) - add guards against memcpy'ing null pointers - use only realloc instead of sometimes using malloc - add function to produce debug representation (for testing) - add literal operator to simplify comparing ... push web-flow travis-ci
65.44
#97 master fix log-escape for negative values (#123) push web-flow travis-ci
65.3
#96 master update coverage configuration (#122) exclude generated code, third party code, and uninformative lines / branches from coverage analysis push web-flow travis-ci
65.3
#95 master rename enums read_type and fastq_flags (#121) To clarifies usage of two commonly used enums, `read_type` was renamed to `read_file`, since it is used to specify input and output file types, while `fastq_flags` was renamed to `read_type` since it ... push web-flow travis-ci
30.75
#94 master rework of support for barcodes in mixed orientations (#110) * barcodes are now "reversed" by simply swapping barcode 1 and 2 * the orientation of input barcodes may be specified using `--mixed-orientation` * if `--mixed-orientation explicit` is u... push web-flow travis-ci
30.75
#93 master rework of sample sequence classes (#120) * split out read_group into its own files * split unit tests into files by class * improvements to doc comments * various minor refactors and lints * many additional unit tests push web-flow travis-ci
29.11
#92 master Revert "drop support for '.' as 'N' in FASTQ reads" (#119) This reverts commit d3814465f. This fixes #112 push web-flow travis-ci
28.13
#91 master rework initializer_list constructor for sample_set (#118) This to avoid having two ways to construct sets, one of which was only used for testing purposes. By using the same code everywhere, test coverage is naturally increased push web-flow travis-ci
27.93
#90 master fixes to HTML barcode table (#117) * fix barcode 1 being shown for barcode 2 * improve placement of barcode toggle push web-flow travis-ci
27.09
#89 master report individual barcode counts when multiple barcodes are used (#116) * fix sample percentages in per-sample HTML table * count per-barcode hits rather than per sample * report individual barcode counts in JSON report * report individual barcod... push web-flow travis-ci
27.05
#88 master support optional values in html template (#115) * remove explicit calls to set_x("") * factor out duplicate code in template parser push web-flow travis-ci
27.41