MikkelSchubert / adapterremoval / #87

Builds Branch Commit Type Ran Committer Via Coverage
#87 master abort on sanitation warnings (#114) * re-add `-fno-sanitize-recover=all`; this was lost during the transition to Meson * remove tests that rely on undefined behavior * fix and clean up duplicate tests push web-flow travis-ci
27.35
#86 master Use 'DS' tags instead of 'CO' for '@RG' comments (#113) The SAM/BAM specification defines 'DS' tags for '@RG' SAM/BAM header records, whereas '@CO' is used for pure comment records. push web-flow travis-ci
27.33
#85 master re-do tests for multiple adapter sequences (#111) The old tests had been checked in with test data that did not actually exercise this functionality push web-flow travis-ci
27.33
#84 master minor improvements to workflow runtime (#109) * Run ccache cleanup manually to prevent cache eviction of useful objects * Disable the `man-db` step during `apt-get install` commands push web-flow travis-ci
27.33
#83 master reduce default verbosity of regression tests (#108) push web-flow travis-ci
27.33
#82 master convert certain warnings to errors (#107) push web-flow travis-ci
27.33
#81 master fixes/improvements to duplicate statistics (#106) * fix duplication statistics gathering and add minimal regression tests * add duplicate statistics plots to html report * fixed wrongly escaped legend settings for this and other plots * add impli... push web-flow travis-ci
27.33
#80 master improvements to utility functions (#104) * move is_ascii_* helperfunction to strutils * update join_text to support any containers * use std::device_random to generate RNG seeds * add function for getting an underlying enum value * addition of / ... push web-flow travis-ci
27.84
#79 master use common constants for /dev/ paths and similiar (#102) This replaces multiple hardcoded strings like "/dev/stdin" and "-" with a constants push web-flow travis-ci
27.7
#78 master improve ccache hit rates (#101) There is generally a high amount of churn in ccache files, due to the (currently) high level of interdependence between files, and cached files are therefore not expected have be relevant for a long time. The maxim... push web-flow travis-ci
27.7
#77 master improvements to build system (#99) - Clean up defined/ifdefs left over from transition to meson - Add ability to (optionally) require and link to mimalloc - Remove build logic from 'Containerfile' and invoke 'Makefile' instead - Add fastjsonschem... push web-flow travis-ci
27.78
#76 master add tests for SAM output when only demultiplexing push MikkelSchubert travis-ci
27.78
#75 master rework debug serialization (#97) - Patch catch2 to disable the built-in stringification of objects with begin()/end() functions, to prevent complex objects from being mangled - Specify custom fallbackStringifier function, that uses a StringStre... push web-flow travis-ci
27.78
#74 master re-add LICENSE file (#96) This is needed since github does not appear to be able to detect SPDX license meta-data push web-flow travis-ci
27.09
#73 master updates to formating and licensing headers (#95) * use SPDX headers for licenses This reduces verbosity and works around an issue with clang-format where some formatting would not be applied due to the \***\ headers. * set AllowAllArgumentsOnNe... push web-flow travis-ci
27.09