MikkelSchubert / adapterremoval / #72

Builds Branch Commit Type Ran Committer Via Coverage
#72 master rework unit tests to check exception messages (#94) This includes fixing a pointless test and a improper error messages on lowercase degenerate FASTQ bases push web-flow travis-ci
27.09
#71 master fix urls and sections in README push MikkelSchubert travis-ci
27.07
#70 master fix manually disabled files when demultiplexing (#92) push web-flow travis-ci
27.09
#69 master harden pre-commit rules (#91) Replaces version tags with commit hashes. Also normalizes YAML formatting and file extensions push web-flow travis-ci
27.09
#68 master add default terminate handler (#90) This allows error handling in the scheduler to be simplified and simplifies debugging. The auto-generated GDB wrapper scripts are updated to break on this handler push web-flow travis-ci
27.09
#67 master tweaks to html report (#89) Change the order of the summary table for consistency with input / output tables, fix a double percentage sign, remove cap on width of citation text, and prevent text from potentially being resized to a lower width tha... push web-flow travis-ci
27.11
#66 master fix trimming with multiple barcodes and add tests (#88) This fixes barcodes after the first (pair) not being adapter-trimmed when using --multiple-barcodes, as well as when additional barcodes are added due to the --reversible-barcodes option push web-flow travis-ci
27.11
#65 master harden workflows (#87) Used https://app.stepsecurity.io/secureworkflow push web-flow travis-ci
27.11
#64 master add basic regression tests for SAM output push MikkelSchubert travis-ci
27.11
#63 master use Makefile in github workflow for consistency push MikkelSchubert travis-ci
27.15
#62 master add script for synthesizing FASTQ reads (#84) The reads generated by this script are only intended to resemble real data at a superficial level, such that they can be used for examples and/or regression tests. push web-flow travis-ci
27.15
#61 master run codespell as part of pre-commit checks (#83) push web-flow travis-ci
27.15
#60 master switch to fastjsonschema This significantly reduces the runtime of regression tests. Built-in support for parallel execution of tests was dropped, for simplicity push MikkelSchubert travis-ci
27.15
#59 master use ccache during CI runs (#81) push web-flow travis-ci
27.15
#58 master skip no-commit-to-branch pre-commit hook during CI (#80) This would cause failures post-merge with master branch push web-flow travis-ci
27.15