1
73%
master: 81%

Ran 07 Jul 2015 09:28PM UTC

Files 384

Run time 16s

Badge

Embed ▾

Committed 07 Jul 2015 09:15PM UTC coverage: 73.057% (+0.008%) from 73.049%

Job # TERM=dumb

Build Type

push

travis-ci

Committed by

droazen

Commit Message

Common read interfaces, with dataflow support

-Converted the core of the hellbender codebase to use common interfaces
 (GATKRead and MutableGATKRead) for working with reads, whether they
 happen to be SAMRecords or Google model reads.

-Wrote necessary coders, etc., to allow the new interface types to work with
 Google dataflow, and ported the dataflow portion of the codebase to use them.

-Picard tools and utilities were not converted, as they proved too tricky
 to adjust to the new semantics of the GATKRead interface.

Run Details

15315 of 20963 relevant lines covered (73.06%)

0.73 hits per line

broadinstitute / hellbender / 1038 / 1
73%
master: 81%

README BADGES
x

Markdown

Textile

RDoc

HTML

Rst

Source Files on job 1038.1 (TERM=dumb)

broadinstitute / hellbender / 1038 / 1 73% master: 81%

README BADGES x

Markdown

Textile

RDoc

HTML

Rst

Source Files on job 1038.1 (TERM=dumb)

broadinstitute / hellbender / 1038 / 1
73%
master: 81%

README BADGES
x