1038
73%
master: 81%

Ran 07 Jul 2015 09:28PM UTC

Jobs 1

Files 384

Run time 18s

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Build # 1038

Build Type

push

travis-ci

Committed by

droazen

Commit Message

Common read interfaces, with dataflow support

-Converted the core of the hellbender codebase to use common interfaces
 (GATKRead and MutableGATKRead) for working with reads, whether they
 happen to be SAMRecords or Google model reads.

-Wrote necessary coders, etc., to allow the new interface types to work with
 Google dataflow, and ported the dataflow portion of the codebase to use them.

-Picard tools and utilities were not converted, as they proved too tricky
 to adjust to the new semantics of the GATKRead interface.

Run Details

15315 of 20963 relevant lines covered (73.06%)

0.73 hits per line

Jobs

ID	Job ID	Ran	Files	Coverage
1	1038.1 (TERM=dumb)	07 Jul 2015 09:28PM UTC	0	73.06	Travis Job 1038.1

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