broadinstitute / viral-ngs / 123 / 6
23%
master: 23%

DEFAULT BRANCH: master
Ran
Files 42
Run time 5s
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Rst
coverage: 31.708%. Remained the same
TRAVIS_JOB=test_snakemake

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exclude secondary alignments and unaligned reads in flagstat output from WDLs (#914)

* in WDLs calling samtools flagstat, exclude secondary alignments and unaligned reads

* indent

424 of 2745 branches covered (15.45%)

2114 of 6667 relevant lines covered (31.71%)

0.32 hits per line

Source Files on job 123.6 (TRAVIS_JOB=test_snakemake)