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Ran 14 May 2026 05:42PM UTC

Files 60

Run time 4s

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Committed 14 May 2026 05:38PM UTC coverage: 93.592% (+0.08%) from 93.517%

Job # 25875420802.1

Build Type

Pull #183

github

Committed by

iskandr

Commit Message

read_phasing: rename threshold test; document has_evidence/partners interface

* Rename test_adapter_respects_min_shared_fragments_threshold to
  test_threshold_filter_propagates_through_adapter and explain that
  the adapter is passive here -- the test asserts the threshold
  propagates rather than being silently undone.
* Document in the module Contract that partners_in_cis and
  has_evidence answer independent questions and are not
  cross-checked. Note that outputs from run_isovar /
  annotate_phased_variants never exhibit a has_evidence=False with a
  non-empty partners_in_cis, since the upstream pipeline only
  populates partners for variants with shared supporting reads.

Pull Request Pull Request #183: Add IsovarReadPhasing adapter for RNA-read variant phasing

Coverage Stats

2556 of 2731 relevant lines covered (93.59%)

0.94 hits per line

openvax / isovar / 25875420802 / 1
94%
master: 94%

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Markdown

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94%
master: 94%

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