openvax / isovar

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• add-agents-md
• add-columns-to-output-args
• add-slice-method-to-protein-sequence
• add-varcode-assembly-provider
• codex/explicit-phase-groups
• codex/fix-allele-counts-cli-output
• codex/fix-filter-flag-doc-example
• codex/fix-position-1-fetch-start
• codex/fix-read-level-cli-output
• codex/merge-overlapping-fragments
• codex/phase-group-assembly-support
• codex/phase-group-transcript-edits
• codex/speed-up-read-collector-lookups
• edit-distance-from-reference-protein-sequence
• exit-early-if-no-reference-contexts
• explicit-phasing-of-somatic-variants
• fix-126-self-subtraction-insertion
• fix-127-mapq-none-typeerror-v2
• fix-130-collapse-substrings-break
• fix-131-n-reads-not-skipped
• fix-132-max-protein-sequences-cap
• fix-134-cli-soft-clipped-flag
• fix-136-mutable-defaults
• fix-137-logger-warn-deprecated
• fix-149-cache-coverage
• fix-150-document-assembly-assumptions
• fix-151-max-sequences-circuit-breaker
• fix-152-subclonal-allele-crash
• fix-153-deterministic-merge
• fix-docs-128-129-133-135
• fix-left-align-indels
• fix-mismatch-count-after-variant
• fix-read-evidence-boundaries
• handle-intergenic-effects
• improve-assembly-scaling
• master
• more-rna-filtering-options
• multiple-phasing-types
• no-more-py27-on-travis
• refactor-cli
• run-integration-tests
• speed-up-LocusRead-construction

Build # 24857217161

Build Type

push

github

Committed by web-flow

Commit Message

Merge pull request #181 from openvax/codex/phase-group-transcript-edits

[codex] Extract transcript edits from assembled cDNA

Coverage Stats

126 of 130 new or added lines in 7 files covered. (96.92%)

2539 of 2715 relevant lines covered (93.52%)

0.94 hits per line