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Ran 14 May 2026 06:35PM UTC

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Committed 14 May 2026 06:31PM UTC coverage: 93.592% (+0.08%) from 93.517%

Job # 25878070721.1

Build Type

Pull #183

github

Committed by

iskandr

Commit Message

read_phasing: align docstring with varcode's generic phasing API

Varcode is dropping Isovar-named identifiers from its public surface
(openvax/varcode#378, openvax/varcode#379). Replace the docstring
reference to the old `IsovarAssemblyProvider` Protocol with the new
`ReadPhasingSource` + `MutantTranscriptSource` split, name the matching
consumer (`ReadPhaseResolver`), and point at openvax/isovar#184 for the
companion heavy-adapter rework that will split `VarcodeAdapter` into
two narrower classes.

No code change; the adapter's method names (`has_evidence`,
`partners_in_cis`) already match the new `ReadPhasingSource` Protocol.

Pull Request Pull Request #183: Add IsovarReadPhasing adapter for RNA-read variant phasing

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2556 of 2731 relevant lines covered (93.59%)

0.94 hits per line

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master: 94%

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openvax / isovar / 25878070721 / 1 94% master: 94%

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Markdown

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Source Files on job 25878070721.1

openvax / isovar / 25878070721 / 1
94%
master: 94%

README BADGES
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