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master: 94%

Ran 16 Apr 2026 03:57AM UTC

Files 55

Run time 1s

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Committed 16 Apr 2026 03:52AM UTC coverage: 93.174% (+0.1%) from 93.077%

Job # 24491093336.3

Build Type

push

github

Committed by

web-flow

Commit Message

Handle mixed alleles in get_single_allele_from_reads instead of crashing (#157)

Previously raised ValueError if reads had different alleles. Now uses the
most common allele and filters to only matching reads, with a warning.
Return signature changed to (allele, filtered_reads) tuple.

This handles edge cases from indel representation ambiguity or subclonal
mixtures without crashing. Callers using the old single-return-value
signature are updated (variant_sequence_creator.py).

Fixes #152

Coverage Stats

2061 of 2212 relevant lines covered (93.17%)

0.93 hits per line

openvax / isovar / 24491093336 / 3
94%
master: 94%

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Markdown

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Source Files on job 24491093336.3

openvax / isovar / 24491093336 / 3
94%
master: 94%

README BADGES
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