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vanvalenlab / deepcell-tf
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Repo Added 14 Dec 2018 11:57PM UTC
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30 Aug 2024 05:06PM UTC coverage: 86.156%. Remained the same
10636483923

push

github

web-flow
DOC: Update application examples with from_version (#729)

* Update model construction with from_version.

* Replace deprecated tostring_rgb with buffer_rgba.

* Modify linting configuration to ignore notebooks.

* Fix docker testing workflow by freeing up space

4848 of 5627 relevant lines covered (86.16%)

3.42 hits per line

Relevant lines Covered
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Build:
5627 RELEVANT LINES 4848 COVERED LINES
3.42 HITS PER LINE
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Recent builds

Builds Branch Commit Type Ran Committer Via Coverage
10636483923 master DOC: Update application examples with from_version (#729) * Update model construction with from_version. * Replace deprecated tostring_rgb with buffer_rgba. * Modify linting configuration to ignore notebooks. * Fix docker testing workflo... push 30 Aug 2024 05:11PM UTC web-flow github
86.16
10310455910 0.12.10 Prepare 0.12.10 release (#726) * Bump deepcell-tracking patch in deps. * Update release job. * Bump version number. * Explicit role to silence sphinx complaint. * Bump Python version for doc testing workflow. * Add .git-blame-ignor... push 08 Aug 2024 10:35PM UTC web-flow github
86.16
10310284183 master Prepare 0.12.10 release (#726) * Bump deepcell-tracking patch in deps. * Update release job. * Bump version number. * Explicit role to silence sphinx complaint. * Bump Python version for doc testing workflow. * Add .git-blame-ignor... push 08 Aug 2024 10:19PM UTC web-flow github
86.16
10307452071 master Bump copyright year to 2024. (#727) push 08 Aug 2024 06:29PM UTC web-flow github
86.16
9812455480 master Update DNN dataset and Caliban models (#721) * Update DNN dataset to 1.1 * Update models with new versions * Implement version options for the tracking and nuclear segmentation applications * Correct dataset zip files to contain folder t... push 05 Jul 2024 06:52PM UTC web-flow github
86.16
9812344202 caliban-paper-updates Try to make docstring parser happy Co-authored-by: Ross Barnowski <rossbar@caltech.edu> Pull #721 05 Jul 2024 06:39PM UTC web-flow github
86.16
9749019612 caliban-paper-updates Implement version options for the tracking and nuclear segmentation applications Pull #721 01 Jul 2024 06:12PM UTC msschwartz21 github
86.16
9748410636 caliban-paper-updates Merge e3f7065f3 into 802ea72db Pull #721 01 Jul 2024 05:21PM UTC web-flow github
86.3
9720433876 caliban-paper-updates Update models with new versions push 29 Jun 2024 01:22AM UTC msschwartz21 github
86.3
9669931813 master Correct the axis which temporal merges are applied to in tracking model (#718) * Apply temporal merge to the time dimensions, not the cell/batch dimension * Make the image norm layer in appearance head configurable * Remove import for a tra... push 25 Jun 2024 09:40PM UTC web-flow github
86.3
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