• Home
  • Features
  • Pricing
  • Docs
  • Announcements
  • Sign In

vanvalenlab / deepcell-tf
73%
master: 86%

Build:
Build:
LAST BUILD BRANCH: 0.12.10
DEFAULT BRANCH: master
Repo Added 14 Dec 2018 11:57PM UTC
Files 51
Badge
Embed â–¾
README BADGES
x

If you need to use a raster PNG badge, change the '.svg' to '.png' in the link

Markdown

Textile

RDoc

HTML

Rst

LAST BUILD ON BRANCH 0.3.0
branch: 0.3.0
CHANGE BRANCH
x
Reset
  • 0.3.0
  • 0.1.0
  • 0.10-rc.1
  • 0.10.0-rc.1
  • 0.10.2
  • 0.10.x
  • 0.11.0
  • 0.11.2
  • 0.12.0
  • 0.12.0rc
  • 0.12.0rc1
  • 0.12.0rc2
  • 0.12.1
  • 0.12.10
  • 0.12.2
  • 0.12.3
  • 0.12.4
  • 0.12.5
  • 0.12.6
  • 0.12.7
  • 0.12.8
  • 0.12.9
  • 0.2.0
  • 0.4.0
  • 0.5.0
  • 0.6.0
  • 0.8.8
  • 0.8.x
  • 0.8.x-tf-2.3.4
  • 0.9.1
  • 0.9.2
  • 0.9.x
  • 0.9.x-bump-tf
  • 3D_nuclear_segmentation
  • 3D_semantic_imagedatagenerator
  • 3D_updated
  • 3d-layer-fix
  • HPS_postprocessing
  • Mesmer_paper_link
  • TCGA
  • accuracy_metrics
  • add_conv_recurrent_layers
  • add_retina_movie
  • add_temporal_to_featurenet3D
  • app-override-pre-post
  • app-resize-output-lists
  • app_batching
  • application-mrgn
  • application_bugfix
  • applications-update
  • applications/tracking
  • bugfix-414
  • bugfix-547
  • bugfix-559
  • bugfix-FPN
  • bugfix-app
  • bugfix-app-resize
  • bugfix-cyto-app
  • bugfix-deepcell-cpu
  • bugfix-panoptic
  • bugfix-retinanet
  • bugfix-setup-py
  • bugfix-skimage
  • bugfix/#215
  • bugfix/218
  • bugfix/219
  • bugfix/225
  • bugfix/249
  • bugfix/273
  • bugfix/28
  • bugfix/283
  • bugfix/290
  • bugfix/297
  • bugfix/302
  • bugfix/351
  • bugfix/377
  • bugfix/382
  • bugfix/445
  • bugfix/README
  • bugfix/app-resize
  • bugfix/app-weights
  • bugfix/clipboxes
  • bugfix/dilated-pool-3d
  • bugfix/docker
  • bugfix/docker-workflow
  • bugfix/docs-badge
  • bugfix/export-list
  • bugfix/imgen-imports
  • bugfix/keras-2.4
  • bugfix/loss-test-sample-weight
  • bugfix/losses-test
  • bugfix/max-detections
  • bugfix/metrics
  • bugfix/multiplex-app
  • bugfix/networkx
  • bugfix/networkx-version
  • bugfix/notebook-flags
  • bugfix/nuclear-model
  • bugfix/opencv-version
  • bugfix/panoptic-notebook
  • bugfix/pixelwise-train-notebook
  • bugfix/preprocessing
  • bugfix/pywt-1.1.1
  • bugfix/readme
  • bugfix/readme-#191
  • bugfix/resize
  • bugfix/skimage
  • bugfix/slow-tests
  • bugfix/test-size
  • bugfix/tracking
  • bugfix/training-path
  • bugfix/training-seeds
  • bugfix/travis-pytest
  • bugfix/typo
  • bump-0.11.1
  • bump-0.12.3
  • bump-0.7.0
  • bump-0.8.4
  • bump-0.8.5
  • bump-1.15.4
  • bump-toolbox
  • bump-version
  • bump-version-0.11.0
  • caliban-paper-updates
  • cell_tracking
  • cell_tracking-pep8
  • cell_tracking_merge
  • centroid_bugfix
  • cicd
  • cleanup
  • cleanup-retinanet-gen
  • cole_test
  • community-files
  • compress
  • contribution_guide
  • copyright
  • correct_model_zoo_readme
  • correct_retinanet_generator
  • cropping_generator
  • crops-contain-objs
  • ct-wg-master
  • ct_mordor_fix
  • cyto-app-reflect
  • dataset_update
  • datasets
  • datasets-allcells
  • datasets-wg
  • datasets_update
  • deepcell-cpu
  • deepcell-dots
  • deepcell-post
  • deepcell-tf-bugfix
  • deepcell_tracking
  • del-scripts
  • dense
  • dependabot/pip/tensorflow-2.5.0
  • disc
  • docker-tests
  • docs-warnings
  • documentation
  • dvv/fix-tracking-model-bug
  • dvv/modify-track
  • dvv/tfrecord
  • dvv/tracking-tfr
  • enhance_retinanet_dvv
  • enhance_retinanet_merge
  • export-argmax
  • fast_hole_filling
  • feature/edge-switch
  • feature/modulify
  • featurepyramid
  • featurepyramid-merge
  • fix-515
  • fix-build-arg
  • fix_interpolation
  • fixed_multiplex_weights
  • fpn-include-top
  • gha-cache
  • gha-docker-image-patch
  • gifs
  • github-actions
  • graphWork
  • graph_tracking
  • graph_tracking_arch_cleanup
  • graph_tracking_layers
  • graph_tracking_model
  • graph_tracking_notebook
  • graph_tracking_rachel
  • graph_tracking_rd
  • graph_tracking_split
  • harmonize_semantic_heads
  • hela
  • hps
  • inference-time-callback
  • jupyterlab
  • keras-applications
  • keras-preprocessing
  • kiosk-training
  • label-scale-models
  • layer_test/tf1.14
  • license-badge
  • location-no-inshape
  • lr-is-deprecated
  • lstm-bugfix
  • manual_model_save
  • master
  • master-edit
  • master-retinanet-fix
  • mesmer_name_update
  • mesmer_postprocess
  • metric_refs
  • metric_update
  • metrics-bbox-emfix
  • metrics/f1
  • metrics_labels
  • migrate_preprocessing
  • mixed-precision
  • mly/spotnet_v1_1
  • mly/spots-datasets
  • mobilenet-backbones
  • model-trainer
  • moved-metrics
  • mrcnn_test
  • mrgn-docs
  • mrgn/0.12.1
  • mrgn/0.12.6
  • mrgn/applications
  • mrgn/dataloader
  • mrgn/docker2.8
  • mrgn/efficientnetv2
  • mrgn/graph-attention
  • mrgn/jinja2
  • mrgn/matplotlib-bugfix
  • mrgn/mesmer-update
  • mrgn/model-metadata
  • mrgn/model-update
  • mrgn/model-updates
  • mrgn/models
  • mrgn/numpy-version
  • mrgn/test-os
  • mrgn/tf2.8
  • mrgn/tracking-metrics
  • mrgn/tracking-models
  • mrgn/tracking-norm
  • mrgn/tracking-notebooks
  • multiple_labels
  • multiplex_application
  • multiplex_application_notebook
  • multiplex_application_update
  • new_model_weights
  • new_multiplex_model
  • ngreenwald-patch-1
  • no-fgbg-nucapp
  • normalization
  • notebooks
  • opencv-headless
  • opencv4
  • padded-tracking-data
  • panoptic-mem
  • panoptic-notebook
  • panoptic_tweaks
  • patch-0.10.1
  • patch-0.8.7
  • pip-package
  • pixel_transform_bugfix
  • pixel_transform_speedup
  • pixelwise_transform_speedup
  • plot-model
  • python-3-9
  • r0.5.0
  • rdilip-tf-dockerfile
  • readme-caliban
  • readme-fix
  • readme_update
  • recurr_gru
  • registry-datasets
  • release-drafter
  • release-drafter-deps-label
  • remove-notebooks-module
  • remove_windows_formatting
  • rename_maskrcnn_to_retinamask
  • reshape_matrix-fix
  • resize_bugfix
  • retinamovie-merge
  • retinanet
  • revert-scale-label-models
  • revert-tf2.5.2
  • rm-retinanet
  • scale-detection
  • semantic-3d-save-bug
  • semantic-docs
  • shape_mask_merge
  • simplify_transforms
  • skimage-17
  • smaller_transform_dtypes
  • subcellular_segmentation_app
  • temporal_training
  • tensorprod
  • test-tf-1.14.0
  • testing
  • tf-1.10
  • tf-1.15.1
  • tf-2.3.2
  • tf-2.4.1
  • tf-2.5.1
  • tf-2.5.2
  • tf-2.5.2-reqs
  • tf.image.resize
  • tf1.15
  • tf2-applications
  • tf2-deps
  • tf2-notebooks
  • tf2-semantic-iterator
  • tf2_migration
  • tf2_migration_updates
  • tf2_tracking
  • tflite-export-utils
  • toolbox-10
  • track_notebook
  • tracking-app-model
  • tracking-app-model-versions
  • tracking-attention
  • tracking-augmentation
  • tracking-bugfix
  • tracking-prepare-revert
  • tracking-tests
  • tracking-updates
  • tracking_app_update
  • tracking_docs_update
  • train_test_set_seed
  • travis-cd
  • travis-ci.com
  • travis/conda
  • update-deepcell-tracking
  • update-docs
  • update-models-from-registry
  • update-readme
  • update-toolbox
  • update-tracking-app-models
  • update-weights
  • update_centroid_transform
  • update_panopticnet
  • update_tracking_app
  • upgrade-tf1.14
  • upgradeTFver
  • visualize_rgb_data
  • weights-hash
  • willgraf-deepcell-data
  • willgraf-patch-1
  • willgraf-readme-spacing
  • willgraf/README
  • willgraf/auto-anchors
  • willgraf/bugfix-model
  • willgraf/cached-session
  • willgraf/deep_watershed
  • willgraf/deprecate-running
  • willgraf/deprecate-tf1.8
  • willgraf/docstrings
  • willgraf/fpn
  • willgraf/gru-test
  • willgraf/hashes
  • willgraf/imgen
  • willgraf/layer-docstrings
  • willgraf/mibi-data
  • willgraf/multi-build
  • willgraf/python2
  • willgraf/rm-resize-layer
  • willgraf/simplify-transforms
  • willgraf/test-callbacks
  • willgraf/test-models
  • willgraf/test-upsample
  • willgraf/tf-1.13
  • willgraf/tf2
  • willgraf/update-tests
  • willgraf/version

pending completion
1488

push

travis-ci-com

web-flow
Add tests for tf 1.14.0 and update model_zoo & application tests for speed. (#248)

* update tensorflow versions to latest pach for each minor and add 1.14.0

* deprecate 1.13.2 as tests do not pass, documented in #245 

* parameterize all data_format loops for performance gains.

* parameterize get_featurenet backbone with data_format (only last)

* remove the for loop from RetinaMask tests

* update base to xenial

* update label and scale detection tests to use the featurenet backbone for performance

* speed up application tests by removing .predict call and examining the output shape

56018 of 76908 relevant lines covered (72.84%)

8.74 hits per line

Relevant lines Covered
Build:
Build:
76908 RELEVANT LINES 56018 COVERED LINES
8.74 HITS PER LINE
Source Files on 0.3.0
Detailed source file information is not available for this build.

Recent builds

Builds Branch Commit Type Ran Committer Via Coverage
1488 0.3.0 Add tests for tf 1.14.0 and update model_zoo & application tests for speed. (#248) * update tensorflow versions to latest pach for each minor and add 1.14.0 * deprecate 1.13.2 as tests do not pass, documented in #245 * parameterize all dat... push 22 Oct 2019 10:29PM UTC web-flow travis-ci-com pending completion  
See All Builds (3054)
  • Repo on GitHub
STATUS · Troubleshooting · Open an Issue · Sales · Support · CAREERS · ENTERPRISE · START FREE · SCHEDULE DEMO
ANNOUNCEMENTS · TWITTER · TOS & SLA · Supported CI Services · What's a CI service? · Automated Testing

© 2026 Coveralls, Inc