vanvalenlab / deepcell-tf

72%

master: 86%

LAST BUILD ON BRANCH 0.1.0

branch: 0.1.0

CHANGE BRANCH

x

Reset

• 0.1.0
• 0.10-rc.1
• 0.10.0-rc.1
• 0.10.2
• 0.10.x
• 0.11.0
• 0.11.2
• 0.12.0
• 0.12.0rc
• 0.12.0rc1
• 0.12.0rc2
• 0.12.1
• 0.12.10
• 0.12.2
• 0.12.3
• 0.12.4
• 0.12.5
• 0.12.6
• 0.12.7
• 0.12.8
• 0.12.9
• 0.2.0
• 0.3.0
• 0.4.0
• 0.5.0
• 0.6.0
• 0.8.8
• 0.8.x
• 0.8.x-tf-2.3.4
• 0.9.1
• 0.9.2
• 0.9.x
• 0.9.x-bump-tf
• 3D_nuclear_segmentation
• 3D_semantic_imagedatagenerator
• 3D_updated
• 3d-layer-fix
• HPS_postprocessing
• Mesmer_paper_link
• TCGA
• accuracy_metrics
• add_conv_recurrent_layers
• add_retina_movie
• add_temporal_to_featurenet3D
• app-override-pre-post
• app-resize-output-lists
• app_batching
• application-mrgn
• application_bugfix
• applications-update
• applications/tracking
• bugfix-414
• bugfix-547
• bugfix-559
• bugfix-FPN
• bugfix-app
• bugfix-app-resize
• bugfix-cyto-app
• bugfix-deepcell-cpu
• bugfix-panoptic
• bugfix-retinanet
• bugfix-setup-py
• bugfix-skimage
• bugfix/#215
• bugfix/218
• bugfix/219
• bugfix/225
• bugfix/249
• bugfix/273
• bugfix/28
• bugfix/283
• bugfix/290
• bugfix/297
• bugfix/302
• bugfix/351
• bugfix/377
• bugfix/382
• bugfix/445
• bugfix/README
• bugfix/app-resize
• bugfix/app-weights
• bugfix/clipboxes
• bugfix/dilated-pool-3d
• bugfix/docker
• bugfix/docker-workflow
• bugfix/docs-badge
• bugfix/export-list
• bugfix/imgen-imports
• bugfix/keras-2.4
• bugfix/loss-test-sample-weight
• bugfix/losses-test
• bugfix/max-detections
• bugfix/metrics
• bugfix/multiplex-app
• bugfix/networkx
• bugfix/networkx-version
• bugfix/notebook-flags
• bugfix/nuclear-model
• bugfix/opencv-version
• bugfix/panoptic-notebook
• bugfix/pixelwise-train-notebook
• bugfix/preprocessing
• bugfix/pywt-1.1.1
• bugfix/readme
• bugfix/readme-#191
• bugfix/resize
• bugfix/skimage
• bugfix/slow-tests
• bugfix/test-size
• bugfix/tracking
• bugfix/training-path
• bugfix/training-seeds
• bugfix/travis-pytest
• bugfix/typo
• bump-0.11.1
• bump-0.12.3
• bump-0.7.0
• bump-0.8.4
• bump-0.8.5
• bump-1.15.4
• bump-toolbox
• bump-version
• bump-version-0.11.0
• caliban-paper-updates
• cell_tracking
• cell_tracking-pep8
• cell_tracking_merge
• centroid_bugfix
• cicd
• cleanup
• cleanup-retinanet-gen
• cole_test
• community-files
• compress
• contribution_guide
• copyright
• correct_model_zoo_readme
• correct_retinanet_generator
• cropping_generator
• crops-contain-objs
• ct-wg-master
• ct_mordor_fix
• cyto-app-reflect
• dataset_update
• datasets
• datasets-allcells
• datasets-wg
• datasets_update
• deepcell-cpu
• deepcell-dots
• deepcell-post
• deepcell-tf-bugfix
• deepcell_tracking
• del-scripts
• dense
• dependabot/pip/tensorflow-2.5.0
• disc
• docker-tests
• docs-warnings
• documentation
• dvv/fix-tracking-model-bug
• dvv/modify-track
• dvv/tfrecord
• dvv/tracking-tfr
• enhance_retinanet_dvv
• enhance_retinanet_merge
• export-argmax
• fast_hole_filling
• feature/edge-switch
• feature/modulify
• featurepyramid
• featurepyramid-merge
• fix-515
• fix-build-arg
• fix_interpolation
• fixed_multiplex_weights
• fpn-include-top
• gha-cache
• gha-docker-image-patch
• gifs
• github-actions
• graphWork
• graph_tracking
• graph_tracking_arch_cleanup
• graph_tracking_layers
• graph_tracking_model
• graph_tracking_notebook
• graph_tracking_rachel
• graph_tracking_rd
• graph_tracking_split
• harmonize_semantic_heads
• hela
• hps
• inference-time-callback
• jupyterlab
• keras-applications
• keras-preprocessing
• kiosk-training
• label-scale-models
• layer_test/tf1.14
• license-badge
• location-no-inshape
• lr-is-deprecated
• lstm-bugfix
• manual_model_save
• master
• master-edit
• master-retinanet-fix
• mesmer_name_update
• mesmer_postprocess
• metric_refs
• metric_update
• metrics-bbox-emfix
• metrics/f1
• metrics_labels
• migrate_preprocessing
• mixed-precision
• mly/spotnet_v1_1
• mly/spots-datasets
• mobilenet-backbones
• model-trainer
• moved-metrics
• mrcnn_test
• mrgn-docs
• mrgn/0.12.1
• mrgn/0.12.6
• mrgn/applications
• mrgn/dataloader
• mrgn/docker2.8
• mrgn/efficientnetv2
• mrgn/graph-attention
• mrgn/jinja2
• mrgn/matplotlib-bugfix
• mrgn/mesmer-update
• mrgn/model-metadata
• mrgn/model-update
• mrgn/model-updates
• mrgn/models
• mrgn/numpy-version
• mrgn/test-os
• mrgn/tf2.8
• mrgn/tracking-metrics
• mrgn/tracking-models
• mrgn/tracking-norm
• mrgn/tracking-notebooks
• multiple_labels
• multiplex_application
• multiplex_application_notebook
• multiplex_application_update
• new_model_weights
• new_multiplex_model
• ngreenwald-patch-1
• no-fgbg-nucapp
• normalization
• notebooks
• opencv-headless
• opencv4
• padded-tracking-data
• panoptic-mem
• panoptic-notebook
• panoptic_tweaks
• patch-0.10.1
• patch-0.8.7
• pip-package
• pixel_transform_bugfix
• pixel_transform_speedup
• pixelwise_transform_speedup
• plot-model
• python-3-9
• r0.5.0
• rdilip-tf-dockerfile
• readme-caliban
• readme-fix
• readme_update
• recurr_gru
• registry-datasets
• release-drafter
• release-drafter-deps-label
• remove-notebooks-module
• remove_windows_formatting
• rename_maskrcnn_to_retinamask
• reshape_matrix-fix
• resize_bugfix
• retinamovie-merge
• retinanet
• revert-scale-label-models
• revert-tf2.5.2
• rm-retinanet
• scale-detection
• semantic-3d-save-bug
• semantic-docs
• shape_mask_merge
• simplify_transforms
• skimage-17
• smaller_transform_dtypes
• subcellular_segmentation_app
• temporal_training
• tensorprod
• test-tf-1.14.0
• testing
• tf-1.10
• tf-1.15.1
• tf-2.3.2
• tf-2.4.1
• tf-2.5.1
• tf-2.5.2
• tf-2.5.2-reqs
• tf.image.resize
• tf1.15
• tf2-applications
• tf2-deps
• tf2-notebooks
• tf2-semantic-iterator
• tf2_migration
• tf2_migration_updates
• tf2_tracking
• tflite-export-utils
• toolbox-10
• track_notebook
• tracking-app-model
• tracking-app-model-versions
• tracking-attention
• tracking-augmentation
• tracking-bugfix
• tracking-prepare-revert
• tracking-tests
• tracking-updates
• tracking_app_update
• tracking_docs_update
• train_test_set_seed
• travis-cd
• travis-ci.com
• travis/conda
• update-deepcell-tracking
• update-docs
• update-models-from-registry
• update-readme
• update-toolbox
• update-tracking-app-models
• update-weights
• update_centroid_transform
• update_panopticnet
• update_tracking_app
• upgrade-tf1.14
• upgradeTFver
• visualize_rgb_data
• weights-hash
• willgraf-deepcell-data
• willgraf-patch-1
• willgraf-readme-spacing
• willgraf/README
• willgraf/auto-anchors
• willgraf/bugfix-model
• willgraf/cached-session
• willgraf/deep_watershed
• willgraf/deprecate-running
• willgraf/deprecate-tf1.8
• willgraf/docstrings
• willgraf/fpn
• willgraf/gru-test
• willgraf/hashes
• willgraf/imgen
• willgraf/layer-docstrings
• willgraf/mibi-data
• willgraf/multi-build
• willgraf/python2
• willgraf/rm-resize-layer
• willgraf/simplify-transforms
• willgraf/test-callbacks
• willgraf/test-models
• willgraf/test-upsample
• willgraf/tf-1.13
• willgraf/tf2
• willgraf/update-tests
• willgraf/version

Build # 1298

Build Type

push

travis-ci-com

Committed by web-flow

Commit Message

Travis builds and pushes both CPU and GPU based docker images. (#224)

* set tensorflow requirement to CPU version >=1.8

* remove the matplotlib line as it is pinned to python3.5

* remove tensorflow from requirements.txt in Dockerfile

* add ENTRYPOINT for jupyter notebook. tf1.13+ entrypoint is bash

* use requirements.txt file but install tensorflow separately from the file.

* set the WORKDIR to /notebooks, if it already exists, move the contents into intro_to_tensorflow, otherwise do nothing.

* apt-get install with non-interactive shell and do not install git

Run Details

63109 of 88005 relevant lines covered (71.71%)

10.75 hits per line