• Home
  • Features
  • Pricing
  • Docs
  • Announcements
  • Sign In

openvax / gtfparse
95%

Build:
DEFAULT BRANCH: master
Repo Added 20 Feb 2018 04:12AM UTC
Files 5
Badge
Embed ▾
README BADGES
x

If you need to use a raster PNG badge, change the '.svg' to '.png' in the link

Markdown

Textile

RDoc

HTML

Rst

LAST BUILD ON BRANCH master
branch: SELECT
CHANGE BRANCH
x
  • No branch selected
  • add-test-for-tag-parsing
  • add-usecols
  • feature/gencode-aliases-and-versions
  • fix-ci-coveralls-race
  • fix-multi-attributes
  • fix/56-expand-attribute-column-false-nameerror
  • get-rid-of-unix-specific-memory-usage-logging
  • master
  • modernize-pyproject
  • modernize-ruff-py2
  • numpy2-support
  • parse-subset-of-features
  • parsing-using-read-csv

13 May 2026 07:26PM UTC coverage: 95.215%. Remained the same
25821451381

push

github

iskandr
test.sh: memory-aware pytest-xdist worker count

Mirror the worker-cap logic from trufflepig/hitlist/tsarina/vaxrank
so concurrent test runs across sibling repos can't fork-bomb the
laptop. Picks min(cpu_reserve, available_RAM / PER_WORKER_GB),
reserves 1-2 cores, falls back to serial pytest when xdist isn't
installed, logs inputs so the chosen worker count is auditable.

199 of 209 relevant lines covered (95.22%)

0.95 hits per line

Relevant lines Covered
Build:
Build:
209 RELEVANT LINES 199 COVERED LINES
0.95 HITS PER LINE
Source Files on master
  • Tree
  • List 5
  • Changed 0
  • Source Changed 0
  • Coverage Changed 0
Coverage ∆ File Lines Relevant Covered Missed Hits/Line

Recent builds

Builds Branch Commit Type Ran Committer Via Coverage
25821451381 master test.sh: memory-aware pytest-xdist worker count Mirror the worker-cap logic from trufflepig/hitlist/tsarina/vaxrank so concurrent test runs across sibling repos can't fork-bomb the laptop. Picks min(cpu_reserve, available_RAM / PER_WORKER_GB), re... push 13 May 2026 07:27PM UTC iskandr github
95.22
25819759602 master Merge pull request #68 from openvax/fix/56-expand-attribute-column-false-nameerror Fix #56: NameError when expand_attribute_column=False push 13 May 2026 06:53PM UTC web-flow github
95.22
25819115218 fix/56-expand-attribute-column-false-nameerror Fix #56: NameError on expand_attribute_column=False The else branch in read_gtf passed `result_df` to parse_gtf before `result_df` had been assigned — a guaranteed NameError that survived because the branch was never tested. Replaced with the cor... Pull #68 13 May 2026 06:41PM UTC iskandr github
95.22
25808914140 master Merge pull request #67 from openvax/feature/gencode-aliases-and-versions Add attribute_aliases + cast_version_columns to read_gtf (closes #63, #64) push 13 May 2026 03:27PM UTC web-flow github
93.78
25808853095 feature/gencode-aliases-and-versions Address review: bug fixes + real GENCODE coverage Fixes from PR review: 1. _apply_attribute_aliases: two aliases targeting the same canonical (e.g. both gene_type and a hypothetical gene_kind -> gene_biotype) silently produced a duplicate-... Pull #67 13 May 2026 03:26PM UTC iskandr github
93.78
25808855103 feature/gencode-aliases-and-versions Merge 668dfb0c1 into d3313ac0c Pull #67 13 May 2026 03:26PM UTC web-flow github
93.78
25808161772 feature/gencode-aliases-and-versions Use pd.api.types.is_string_dtype to tolerate StringDtype on newer pandas Python 3.9 / 3.11 CI failed on test_cast_version_columns_false_keeps_strings because newer pandas returns its own StringDtype (rather than the numpy object dtype) for string... Pull #67 13 May 2026 03:14PM UTC iskandr github
90.0
24740466095 master Merge pull request #61 from openvax/modernize-pyproject Modernize pyproject config, add format.sh, align with mhcgnomes push 21 Apr 2026 06:50PM UTC web-flow github
86.47
24740421170 modernize-pyproject Merge branch 'master' into modernize-pyproject Pull #61 21 Apr 2026 06:49PM UTC iskandr github
86.47
24740364710 master Merge pull request #62 from openvax/fix-ci-coveralls-race Fix Coveralls race: upload coverage from one Python version only push 21 Apr 2026 06:48PM UTC web-flow github
86.47
See All Builds (58)
  • Repo on GitHub
STATUS · Troubleshooting · Open an Issue · Sales · Support · CAREERS · ENTERPRISE · START FREE · SCHEDULE DEMO
ANNOUNCEMENTS · TWITTER · TOS & SLA · Supported CI Services · What's a CI service? · Automated Testing

© 2026 Coveralls, Inc