openvax / gtfparse
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Builds Branch Commit Type Ran Committer Via Coverage
34867758590 deslop/readme-examples Fix README examples for the Polars DataFrame read_gtf returns read_gtf returns a Polars DataFrame by default, so the pandas-style boolean-mask indexing in the first example raises ValueError. The StringTie example keyed its dict by seqname and fi... Pull #74 iskandr github
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28970605686 master Merge pull request #72 from openvax/feature/21-write-gtf Add write_gtf: serialize a DataFrame back to GTF (fixes #21) push web-flow github
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28970588144 feature/21-write-gtf Bump version to 2.8.0 Minor release: adds write_gtf, the inverse of read_gtf, for serializing a DataFrame of genomic features back to GTF (#21). Claude-Session: https://claude.ai/code/session_014fNxSBm5zvdsDNwN3nhmpS push iskandr github
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28970590726 feature/21-write-gtf Merge 06fb59af1 into 6b2e0c73e Pull #72 web-flow github
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28970419586 feature/21-write-gtf write_gtf: case-insensitive .gz, edge-case tests, doc caveat Follow-ups from review of #72: - Detect the gzip suffix case-insensitively (.GZ as well as .gz). - Note in the docstring that a literal tab or newline in an attribute value is unrepr... Pull #72 iskandr github
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28969477314 feature/21-write-gtf write_gtf: robust, vectorized, gzip-aware; test both round-trip directions Addresses the review findings on the first draft: - Faithful missing-value handling. read_gtf represents an absent attribute as null (numeric *_version columns) or the ... Pull #72 iskandr github
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28968358897 master Merge pull request #71 from openvax/fix/70-remove-basicconfig-at-import Fix #70: stop calling logging.basicConfig() at import time push web-flow github
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28968279719 fix/70-remove-basicconfig-at-import Bump version to 2.7.2 Patch release: gtfparse no longer calls logging.basicConfig() at import time, so importing the library no longer reconfigures the host application's root logger (#70). Claude-Session: https://claude.ai/code/session_014fNxSB... Pull #71 iskandr github
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28967537707 fix/70-remove-basicconfig-at-import Use lazy logging args instead of eager % interpolation Pass log message arguments to logger.info(...) rather than pre-formatting with the % operator, so the interpolation is skipped entirely when the log level is disabled (the standard logging id... Pull #71 iskandr github
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28967540561 fix/70-remove-basicconfig-at-import Merge 2f24147c4 into 03668a374 Pull #71 web-flow github
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