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openvax / gtfparse
97%

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DEFAULT BRANCH: master
Repo Added 20 Feb 2018 04:12AM UTC
Files 8
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LAST BUILD ON BRANCH master
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  • master
  • add-test-for-tag-parsing
  • add-usecols
  • deslop/readme-examples
  • docs/reader-oriented-guides
  • feat/pandas-reader-optional-polars
  • feature/21-write-gtf
  • feature/80-parsing-progress
  • feature/gencode-aliases-and-versions
  • fix-70-no-import-time-basicconfig
  • fix-ci-coveralls-race
  • fix-multi-attributes
  • fix/56-expand-attribute-column-false-nameerror
  • fix/70-remove-basicconfig-at-import
  • fix/77-polars-string-cache
  • fix/packaging-and-cleanup
  • get-rid-of-unix-specific-memory-usage-logging
  • modernize-pyproject
  • modernize-ruff-py2
  • numpy2-support
  • parse-subset-of-features
  • parsing-using-read-csv
  • perf/attribute-expansion

06 Oct 2026 05:50PM UTC coverage: 97.236% (+1.6%) from 95.652%
37506636611-1

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Optimize attribute parsing and bound Arrow assembly memory (3.0.2) (#94)

* Optimize attribute parsing and bound Arrow assembly memory (3.0.1)

* Reserve 3.0.2 for the independent optimization release

* Exercise opt-in Arrow string batches on pandas 2

387 of 398 relevant lines covered (97.24%)

6.77 hits per line

Relevant lines Covered
Build:
Build:
398 RELEVANT LINES 387 COVERED LINES
6.77 HITS PER LINE
Source Files on master
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  • List 8
  • Changed 4
  • Source Changed 0
  • Coverage Changed 4
Coverage ∆ File Lines Relevant Covered Missed Hits/Line

Recent builds

Builds Branch Commit Type Ran Committer Via Coverage
37506636... master Optimize attribute parsing and bound Arrow assembly memory (3.0.2) (#94) * Optimize attribute parsing and bound Arrow assembly memory (3.0.1) * Reserve 3.0.2 for the independent optimization release * Exercise opt-in Arrow string batches on pan... push 06 Oct 2026 05:50PM UTC web-flow github
97.24
37487400... master Remove required Polars dependency and default to pandas (3.0.0) (#89) * Remove required Polars dependency and default to pandas in 3.0.0 * Give each CI attempt a separate Coveralls report push 06 Oct 2026 03:26PM UTC web-flow github
95.65
36592149751 master Merge pull request #84: packaging fixes and cleanup Fix source distribution tests and license metadata (2.9.1) push 29 Sep 2026 03:42PM UTC web-flow github
96.75
36580499804 master Merge pull request #82: GTF parsing progress and attribute fixes Add GTF parsing progress and fix attribute data loss (2.9.0) push 29 Sep 2026 02:09PM UTC web-flow github
96.75
36460265661 master Merge pull request #78 from openvax/fix/77-polars-string-cache Fix deprecated Polars string cache calls (2.8.1) push 28 Sep 2026 05:45PM UTC web-flow github
95.63
28970605686 master Merge pull request #72 from openvax/feature/21-write-gtf Add write_gtf: serialize a DataFrame back to GTF (fixes #21) push 08 Jul 2026 07:41PM UTC web-flow github
95.62
28968358897 master Merge pull request #71 from openvax/fix/70-remove-basicconfig-at-import Fix #70: stop calling logging.basicConfig() at import time push 08 Jul 2026 07:03PM UTC web-flow github
95.15
25821451381 master test.sh: memory-aware pytest-xdist worker count Mirror the worker-cap logic from trufflepig/hitlist/tsarina/vaxrank so concurrent test runs across sibling repos can't fork-bomb the laptop. Picks min(cpu_reserve, available_RAM / PER_WORKER_GB), re... push 13 May 2026 07:27PM UTC iskandr github
95.22
25819759602 master Merge pull request #68 from openvax/fix/56-expand-attribute-column-false-nameerror Fix #56: NameError when expand_attribute_column=False push 13 May 2026 06:53PM UTC web-flow github
95.22
25808914140 master Merge pull request #67 from openvax/feature/gencode-aliases-and-versions Add attribute_aliases + cast_version_columns to read_gtf (closes #63, #64) push 13 May 2026 03:27PM UTC web-flow github
93.78
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