openvax / gtfparse / 25821451381

Builds Branch Commit Type Ran Committer Via Coverage
25821451381 master test.sh: memory-aware pytest-xdist worker count Mirror the worker-cap logic from trufflepig/hitlist/tsarina/vaxrank so concurrent test runs across sibling repos can't fork-bomb the laptop. Picks min(cpu_reserve, available_RAM / PER_WORKER_GB), re... push iskandr github
95.22
25819759602 master Merge pull request #68 from openvax/fix/56-expand-attribute-column-false-nameerror Fix #56: NameError when expand_attribute_column=False push web-flow github
95.22
25819115218 fix/56-expand-attribute-column-false-nameerror Fix #56: NameError on expand_attribute_column=False The else branch in read_gtf passed `result_df` to parse_gtf before `result_df` had been assigned — a guaranteed NameError that survived because the branch was never tested. Replaced with the cor... Pull #68 iskandr github
95.22
25808914140 master Merge pull request #67 from openvax/feature/gencode-aliases-and-versions Add attribute_aliases + cast_version_columns to read_gtf (closes #63, #64) push web-flow github
93.78
25808853095 feature/gencode-aliases-and-versions Address review: bug fixes + real GENCODE coverage Fixes from PR review: 1. _apply_attribute_aliases: two aliases targeting the same canonical (e.g. both gene_type and a hypothetical gene_kind -> gene_biotype) silently produced a duplicate-... Pull #67 iskandr github
93.78
25808855103 feature/gencode-aliases-and-versions Merge 668dfb0c1 into d3313ac0c Pull #67 web-flow github
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25808161772 feature/gencode-aliases-and-versions Use pd.api.types.is_string_dtype to tolerate StringDtype on newer pandas Python 3.9 / 3.11 CI failed on test_cast_version_columns_false_keeps_strings because newer pandas returns its own StringDtype (rather than the numpy object dtype) for string... Pull #67 iskandr github
90.0
24740466095 master Merge pull request #61 from openvax/modernize-pyproject Modernize pyproject config, add format.sh, align with mhcgnomes push web-flow github
86.47
24740421170 modernize-pyproject Merge branch 'master' into modernize-pyproject Pull #61 iskandr github
86.47
24740364710 master Merge pull request #62 from openvax/fix-ci-coveralls-race Fix Coveralls race: upload coverage from one Python version only push web-flow github
86.47
24740319490 fix-ci-coveralls-race Fix Coveralls race: upload coverage from one Python version only Previously every matrix job uploaded coverage to Coveralls, which caused the parallel-build race: whichever job finished first closed the build, and the rest failed with "Can't add ... Pull #62 iskandr github
86.47
24735416792 modernize-pyproject Modernize pyproject.toml config, add format.sh, align with mhcgnomes conventions - pyproject.toml: add [build-system], bump requires-python to >=3.9, expand classifiers, add [tool.ruff] base (py39, line-length 100), expand ruff lint rules (W/... Pull #61 iskandr github
86.47
24138968050 master Merge pull request #60 from openvax/modernize-ruff-py2 Modernize: switch to ruff, remove Python 2 compat push web-flow github
86.47
24137696180 modernize-ruff-py2 Merge 8ad370a51 into d421e1f07 Pull #60 web-flow github pending completion
24137693953 modernize-ruff-py2 Restore __init__.py exports (only bump version, don't delete contents) Pull #60 iskandr github
86.47