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broadinstitute / hellbender
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LAST BUILD BRANCH: dr_disentangle_spark_and_dataflow
DEFAULT BRANCH: master
Repo Added 06 Jan 2015 07:33PM UTC
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LAST BUILD ON BRANCH tw_hadoop_bam_writer
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pending completion
2070

push

travis-ci

tomwhite
When running on Spark (or writing to HDFS), use the Hadoop-BAM library
for writing BAM files. This reduces memory usage since the reads
don't need to all be stored in memory.

Also add some missing calls to addDataflowRunnerArgs in the integration
tests to ensure the correct dataflow runner is being picked up.

37 of 37 new or added lines in 1 file covered. (100.0%)

19508 of 24642 relevant lines covered (79.17%)

1.73 hits per line

Relevant lines Covered
Build:
Build:
24642 RELEVANT LINES 19508 COVERED LINES
1.73 HITS PER LINE
Source Files on tw_hadoop_bam_writer
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  • Changed 1
  • Source Changed 1
  • Coverage Changed 1
Coverage ∆ File Lines Relevant Covered Missed Hits/Line

Recent builds

Builds Branch Commit Type Ran Committer Via Coverage
2070 tw_hadoop_bam_writer When running on Spark (or writing to HDFS), use the Hadoop-BAM library for writing BAM files. This reduces memory usage since the reads don't need to all be stored in memory. Also add some missing calls to addDataflowRunnerArgs in the integration... push 25 Aug 2015 01:48PM UTC tomwhite travis-ci pending completion  
2055 tw_hadoop_bam_writer When running on Spark (or writing to HDFS), use the Hadoop-BAM library for writing BAM files. This reduces memory usage since the reads don't need to all be stored in memory. Also add some missing calls to addDataflowRunnerArgs in the integration... push 24 Aug 2015 01:48PM UTC tomwhite travis-ci pending completion  
1997 tw_hadoop_bam_writer When running on Spark (or writing to HDFS), use the Hadoop-BAM library for writing BAM files. This reduces memory usage since the reads don't need to all be stored in memory. Also add some missing calls to addDataflowRunnerArgs in the integration... push 20 Aug 2015 06:16PM UTC tomwhite travis-ci pending completion  
1990 tw_hadoop_bam_writer When running on Spark (or writing to HDFS), use the Hadoop-BAM library for writing BAM files. This reduces memory usage since the reads don't need to all be stored in memory. Also add some missing calls to addDataflowRunnerArgs in the integration... push 20 Aug 2015 03:51PM UTC tomwhite travis-ci pending completion  
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