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broadinstitute / hellbender
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LAST BUILD BRANCH: dr_disentangle_spark_and_dataflow
DEFAULT BRANCH: master
Repo Added 06 Jan 2015 07:33PM UTC
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pending completion
2274

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travis-ci

jean-philippe-martin
Run existing mark duplicates tests for the Dataflow version. Disable tests that don't pass yet, and we will revisit them to figure out where the bug is.

19666 of 24880 relevant lines covered (79.04%)

0.95 hits per line

Relevant lines Covered
Build:
Build:
24880 RELEVANT LINES 19666 COVERED LINES
0.95 HITS PER LINE
Source Files on tn_mark_duplicates
  • List 0
  • Changed 353
  • Source Changed 48
  • Coverage Changed 352
Coverage ∆ File Lines Relevant Covered Missed Hits/Line

Recent builds

Builds Branch Commit Type Ran Committer Via Coverage
2274 tn_mark_duplicates Run existing mark duplicates tests for the Dataflow version. Disable tests that don't pass yet, and we will revisit them to figure out where the bug is. push 04 Sep 2015 10:05PM UTC jean-philippe-martin travis-ci pending completion  
1797 tn_mark_duplicates Run existing mark duplicates tests for the Dataflow version. Disable tests that don't pass yet, and we will revisit them to figure out where the bug is. push 12 Aug 2015 10:02PM UTC tovanadler travis-ci pending completion  
1792 tn_mark_duplicates Run existing mark duplicates tests for the Dataflow version. Disable tests that don't pass yet, and we will revisit them to figure out where the bug is. push 12 Aug 2015 09:19PM UTC tovanadler travis-ci pending completion  
1790 tn_mark_duplicates Update tests to only disable the broken ones for dataflow, not for picard. Also, rename ELIGIBLE_QUALITY to ELIGIBLE_BASE_QUALITY. push 12 Aug 2015 09:02PM UTC tovanadler travis-ci pending completion  
1750 tn_mark_duplicates Style cleanup. push 10 Aug 2015 10:06PM UTC tovanadler travis-ci pending completion  
1649 tn_mark_duplicates Merge branch 'master' of https://github.com/broadinstitute/hellbender into tn_mark_duplicates push 06 Aug 2015 05:49PM UTC tovanadler travis-ci pending completion  
1626 tn_mark_duplicates Response to PR comments: adds an ArgumentCollection for OpticalDuplicates command line options, removes the specialized DuplicationMetrics coder by making that class serializable (and suppressing the serialVersionUid warning), adds a filter to the... push 05 Aug 2015 09:07PM UTC tovanadler travis-ci pending completion  
1591 tn_mark_duplicates Fix compiler error. push 04 Aug 2015 08:17PM UTC tovanadler travis-ci pending completion  
1074 tn_mark_duplicates Add support for Optical Duplicate tracking to MarkDuplicates. Also, clean up comments and function names to make the functionality clearer. Tests will be added soon - we need to add more framework for unit testing MarkDuplicatesDataflow and output... push 09 Jul 2015 05:11PM UTC tovanadler travis-ci pending completion  
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