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broadinstitute / hellbender
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LAST BUILD BRANCH: dr_disentangle_spark_and_dataflow
DEFAULT BRANCH: master
Repo Added 06 Jan 2015 07:33PM UTC
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LAST BUILD ON BRANCH ak_Annotator
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  • ak_Annotator
  • AddLogStatements
  • BRUTest
  • CTBuilder
  • ak_AddOrReplaceReadGroups_test
  • ak_CalculateReadGroupChecksum_tests
  • ak_CigarUtils_tests
  • ak_CollectBaseDistributionByCycle_tests
  • ak_CollectQualityYieldMetrics_test
  • ak_CollectWgsMetrics_test
  • ak_LeftAlignIndels
  • ak_LiftOverIntervalList_test
  • ak_MeanQualityByCycle_spark2
  • ak_MisencodedBaseQualityReadTransformer
  • ak_QualityScoreDistribution_tests
  • ak_ReadLikelihoodCalculationEngine
  • ak_ReplaceSamHeader_test
  • ak_VariantAnnotatorEngine
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  • ak_bqsr_NPE
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  • ak_bqsr_part2
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  • ak_coverage_spark
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  • dr_artificialreadutils_specify_contig_in_artificial_uuid_methods
  • dr_authenticated_pipeline_options_test_helper
  • dr_change_logging_level
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  • dr_customize_reference_window_in_dataflow_sharding
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  • dr_fix_featuredatasource_caching
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  • dr_fix_sequence_dict_check_in_bqsr_dataflow
  • dr_gatkcoder_test
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  • dr_handle_reads_that_consume_no_ref_bases_in_readwalkers
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  • dr_make_context_objects_non_optional
  • dr_more_contigs_in_artificialreadutils
  • dr_move_simpleinterval_to_hellbender
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  • dr_remove_com_sun_import
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  • dr_rename_sam_utils_package
  • dr_rev_htsjdk_to_1.132
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  • dr_spark_pipeline_markdupes_sharding_fix
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  • dr_test_cram_with_intervals
  • ek_comment_802
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  • ek_craminttests_675
  • ek_cramreference_606
  • ek_cramreference_677
  • ek_fixtests_659
  • ek_fixwarnings_359_377
  • ek_locatable_559
  • ek_npe_273
  • ek_refdict_802
  • ek_seqdict_101
  • ek_unmapped_766
  • ek_wordcount_537
  • expand_dataflow_test_contigs
  • firstCheckin
  • fix_gradle_one_more_time
  • gvda_authorlist_sorting
  • gvda_current_gatk_links
  • issue-948-option-duplicate-reads-exomereadcounts
  • jp_ApiMeansNoSecrets
  • jp_ApplyBQSR
  • jp_ApplyBQSRCloud2
  • jp_BaseRecalOutputs
  • jp_CEU_test_data
  • jp_CloudTests
  • jp_DFBR_cloud
  • jp_DF_BaseRecalibrator
  • jp_FewReadsWriter
  • jp_ReadSourceStringency
  • jp_RecalibrationTablesMerger
  • jp_adding_first_test
  • jp_apply_skel_rebased
  • jp_badtype_repro
  • jp_bigger_apiref
  • jp_binarysearch
  • jp_bqsr_newtest
  • jp_bqsr_skel_rerebased
  • jp_consistentWhitespace
  • jp_enable_working_tests
  • jp_fixFatJar
  • jp_fix_BaseRecal_test
  • jp_fix_refapisource
  • jp_fix_secrets
  • jp_intervalsskiplist
  • jp_perf_apply2
  • jp_perf_br
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  • jp_skel_01
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  • jp_start_with_mandatory_tests
  • jp_start_with_mandatory_tests_rebased
  • jp_start_with_mandatory_tests_rebased2
  • jp_testReadWrite
  • jp_uprev_genomics-dataflow
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  • ks_print_reads_by_read_group
  • lb_add_key_for_travis
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  • lb_bqsr_scaling_tweaks
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  • lb_codeship
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  • lb_dataflow
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  • lb_delete_commandlineparse_exception
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  • lb_delete_unused_classes_relating_to_MarkDuplicates
  • lb_dockerizing_for_execution_service
  • lb_enable_circle_ci
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  • lb_exception_hidden_by_onShutdown_exception
  • lb_expose_test_classes
  • lb_fix_137_truncate_names_with_whitespace
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  • lb_make_working_cloud_tests_mandatory
  • lb_mavenization
  • lb_minor_utils_cleanups
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  • lb_move_placement_of_travis_wait
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  • lb_optimize_GATKRead_getLength
  • lb_option_to_run_all_tests
  • lb_output_failed_tests
  • lb_parallel_tests
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  • lb_r_installation_refactoring
  • lb_r_output_improvement
  • lb_reduce_test_time_for_SplitNCigarReads
  • lb_reinstate_transformers_and_filters
  • lb_remove_deprecated
  • lb_remove_encrypted_key_for_now
  • lb_remove_min_max_elems_cli
  • lb_remove_sudo
  • lb_remove_the_vampire_that_haunts_valentine
  • lb_remove_unecessary_gradle_download
  • lb_remove_unused_genotypeutils
  • lb_rename_option
  • lb_rename_usage_short
  • lb_replace_TestPipeline_with_GatkTestPipeline
  • lb_replace_file_create_temp_file
  • lb_return_values
  • lb_scale_back_R
  • lb_scaling
  • lb_simple_interval_constructor
  • lb_sort_dependencies
  • lb_stop_creating_test_file_in_basedir
  • lb_suppress_warnings
  • lb_test_speedup
  • lb_transfer
  • lb_travis_container_build
  • lb_travis_lfs
  • lb_unix_style_options
  • lb_update_ReadSource_for_public_consumption
  • lb_update_dependencies
  • lb_update_gradle_to_2.7
  • lb_update_htsjdk
  • lb_update_license_to_bsd
  • lb_update_sam_header
  • lb_update_to_central_htsjdk
  • lb_update_to_snapshot_google_http
  • lb_updating_dataflow_sdk_and_others
  • lb_upload_test_reports
  • lb_version_number
  • lbergelson-readme-update
  • master
  • mds_cleanup_picard_package
  • mds_fix_compare_sams
  • mds_fix_picard_issues
  • mds_migrate_picard_sam
  • mds_picard_sam_2
  • mds_port_all_the_things
  • mds_resync_picard_sam
  • mds_update_integration_test
  • mds_vectorize_coveralls_badge
  • tn_mark_duplicates
  • tw_hadoop_bam_writer
  • tw_hadoop_references
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  • tw_hadoop_use_seq_dict
  • tw_hadoop_variants
  • tw_local_base_recalibrator_test
  • tw_parallelism_comment
  • tw_r_groups
  • tw_shared_spark_context
  • tw_spark_fix_adam_deps
  • tw_spark_mark_dupes_sharded
  • tw_spark_markdupes
  • tw_spark_markdupes_optimization
  • tw_spark_sam_record_optimization
  • tw_spark_shadowjar_fix
  • tw_spark_sort_bam
  • tw_spark_test_group
  • tw_test
  • tw_ul_spark_bqsr
  • ul_parquet_io
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  • vrr_exome_depth
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  • vrr_feature_iterators
  • vrr_help_generation_on_enum_options_change_toSring_to_name
  • vrr_mark_duplicates_erc
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  • vrr_remove_genomeloc_from_erc
  • wb_copyright

pending completion
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akiezun
Variant annotations plus tests

21292 of 26714 relevant lines covered (79.7%)

0.95 hits per line

Relevant lines Covered
Build:
Build:
26714 RELEVANT LINES 21292 COVERED LINES
0.95 HITS PER LINE
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Recent builds

Builds Branch Commit Type Ran Committer Via Coverage
2295 ak_Annotator Variant annotations plus tests push 08 Sep 2015 04:59PM UTC akiezun travis-ci pending completion  
2287 ak_Annotator compile error fixes push 06 Sep 2015 05:16AM UTC akiezun travis-ci pending completion  
2286 ak_Annotator review comments addressed push 06 Sep 2015 02:52AM UTC akiezun travis-ci pending completion  
2282 ak_Annotator small cleanup push 05 Sep 2015 06:49PM UTC akiezun travis-ci pending completion  
2281 ak_Annotator extract code for Fisher's exact test to a utility class and replace nasty and slow implementation with clean and fast one push 05 Sep 2015 06:38PM UTC akiezun travis-ci pending completion  
2280 ak_Annotator extract code for Fisher's exact test to a utility class and replace nasty and slow implementation with clean and fast one push 05 Sep 2015 06:21PM UTC akiezun travis-ci pending completion  
1971 ak_Annotator Variant annotations plus tests (includes classes that are not supposed to be reviewed and added here only to compile and make tests pass. Those classes are being reviewed in other pull requests. I'll mark them on github) push 19 Aug 2015 08:45PM UTC akiezun travis-ci pending completion  
1968 ak_Annotator rounding plus comments push 19 Aug 2015 08:23PM UTC akiezun travis-ci pending completion  
1945 ak_Annotator silly name conflict push 19 Aug 2015 05:21PM UTC akiezun travis-ci pending completion  
1905 ak_Annotator tests for TandemRepeat + copied TestingReferenceDataSource push 18 Aug 2015 07:45PM UTC akiezun travis-ci pending completion  
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