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broadinstitute / hellbender
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Repo Added 06 Jan 2015 07:33PM UTC
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LAST BUILD ON BRANCH lb_reduce_test_time_for_SplitNCigarReads
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pending completion
648

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lbergelson
reduce iterations in tests using generateCigarList

We have a number of tests using an exhaustive cigar generator ReadClipperTestUtils.generateCigarList to generate every permutation of cigar string up to a certain length.
Reduced it the maximum cigar length in tests in  ReadClipperUnitTest, SplitNCigarReadsIntegrationTest, and SplitNCigarReadsUnitTest from 10 -> 9.

This reduces the time these tests take by ~1 order of magnitude and shouldn't reduce the effectiveness of the tests very much.
Also renamed the length variable in some cases to more accurately describe it.

13838 of 19314 relevant lines covered (71.65%)

0.72 hits per line

Relevant lines Covered
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Build:
19314 RELEVANT LINES 13838 COVERED LINES
0.72 HITS PER LINE
Source Files on lb_reduce_test_time_for_SplitNCigarReads
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  • Changed 18
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  • Coverage Changed 18
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Recent builds

Builds Branch Commit Type Ran Committer Via Coverage
648 lb_reduce_test_time_for_SplitNCigarReads reduce iterations in tests using generateCigarList We have a number of tests using an exhaustive cigar generator ReadClipperTestUtils.generateCigarList to generate every permutation of cigar string up to a certain length. Reduced it the maximum c... push 04 Jun 2015 03:31PM UTC lbergelson travis-ci pending completion  
634 lb_reduce_test_time_for_SplitNCigarReads addressing david's comment and reducing related test push 03 Jun 2015 09:58PM UTC lbergelson travis-ci pending completion  
590 lb_reduce_test_time_for_SplitNCigarReads reduce number of iterations in SplitNCigarReadsTests These take several minutes currently, reducing the number of iterations by an order of magnitude speeds them up and shouldn't greatly impact the effectiveness of the tests. push 27 May 2015 03:40PM UTC lbergelson travis-ci pending completion  
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