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Build # 543

Build Type

push

travis-ci

Committed by lh64

Commit Message

Updated ROA and GA implementations to account for BooleanNet "ranks"
(no. of steps between updates) by including delay rules of the form
A(delay='0',reset='N') >> A(delay='1',reset='Y') with rate constants
equal to 1. For GSP, these rules are omitted and the rate constant is
set equal to 1/rank.

Also updated run_ABC_example.py to run 1000 GSP, 1000 ROA, and 2000 GA
simulations each and plot the results on separate plots. The GSP results
are plotted vs. time. The ROA results are plotted vs. round. For
comparison, GA simulations are run *twice*, once plotted vs. time and
the second time plotted vs. round (where round = no. of monomers).

Run Details

4627 of 6900 relevant lines covered (67.06%)

0.67 hits per line