LoLab-VU / pysb / 978

Builds Branch Commit Type Ran Committer Via Coverage
978 gpu_ssa Update notes within parsing function. Adding more references and notes to template code. Adding verbose definitions within templates, will be compiled as defined if verbose>0 when simulator created. Removing device type from example simulator. Us... push JamesPino travis-ci pending completion
965 gpu_ssa Cleaning up naming in template. push JamesPino travis-ci pending completion
962 gpu_ssa Simplification of pyopencl code. Now users are prompted to select platform and devices for simulations ( they can also set a global variable). Updated documentation of templates. Re-added the ability to use single precision simulations. This is ... push JamesPino travis-ci pending completion
933 rule_function Added unit tests and applied suggested changes push ortega2247 travis-ci pending completion
932 rule_function include macros functions in rule._function push ortega2247 travis-ci pending completion
931 v1.9.1 Use new anaconda libsbml pkg on Python 3.7 (#448) Pre-built package should reduce Travis build time push web-flow travis-ci pending completion
930 master Use new anaconda libsbml pkg on Python 3.7 (#448) Pre-built package should reduce Travis build time push web-flow travis-ci pending completion
929 master Fix BngSimulator when supplying initials as params (#450) The Simulator class allows users to change initials by supplying new underlying parameter values (if both initials and params are supplied, initials take precedence). This behaviour w... push web-flow travis-ci pending completion
928 gpu_ssa Merge branch 'gpu_ssa' of https://github.com/LoLab-VU/pysb into gpu_ssa push JamesPino travis-ci pending completion
927 gpu_ssa Correcting logic for running various types of simulation conditions. Before there was an issue when passing a dictionary with a list of values to the simulators, since i assumed it would take lists. Corrected this and added tests that would have f... push JamesPino travis-ci pending completion
926 gpu_ssa Found a bug in the SSA code when the total propensity hits 0. It was storing the second to last value of the trajectory, rather that the previous one. Also found an error when passing parameter sets that change the initials. It was creating an in... push JamesPino travis-ci pending completion
925 gpu_ssa Adding encoding. push JamesPino travis-ci pending completion
923 gpu_ssa Removing unicode from schlogl. Python2 errored on Travis. push JamesPino travis-ci pending completion
922 gpu_ssa Removing new line that was added in formatting. It broke the code push JamesPino travis-ci pending completion
921 gpu_ssa Updating gpu examples naming to distinguish which code is being used. Adding model description and reference to models. Changing SimulatorException to ImportError when checking for pycuda/pyopencl. Adding documentation to opencl push JamesPino travis-ci pending completion