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FAIRmat-NFDI / nomad-parser-plugin-boss
99%
main: 99%

Build:
Build:
LAST BUILD BRANCH: 82-workflow-graph
DEFAULT BRANCH: main
Repo Added 19 Nov 2024 11:12AM UTC
Token P7qHsrKhGTWQUzmkQoSu46ZukGSuOEvdZ regen
Build 20 Last
Files 3
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LAST BUILD ON BRANCH 82-workflow-graph
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  • 2-add-parameter-name-insertion
  • 78-convergence-figure
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  • chore/devcontainer-ruff-extra
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  • migrate-boss-mesh-api
  • name-hdf5-slice-groups
  • parameter-geometry-metrics

19 Sep 2026 12:00PM UTC coverage: 99.162% (+0.07%) from 99.094%
35441636266

Pull #92

github

ndaelman-hu
Represent a BOSS run as a NOMAD workflow graph

Surface the optimization as archive.workflow2: a serial chain of objective
evaluations (eval_1 -> ... -> eval_N) ending in the predicted global minimum,
with edges drawn by shared section identity (a task's output and the next
task's input reference the same Evaluation instance).

Add Evaluation (carrying a forward-compatible `computation` reference seam for
a future online recommend -> compute -> feedback loop) and PredictedMinimum
sections, populated from the acquisition history; assemble the Workflow / Task
/ Link chain in normalize. Node labels carry the BOSS iteration so the
per-iteration batch structure is visible.
Pull Request #92: Represent a BOSS run as a NOMAD workflow graph

27 of 27 new or added lines in 1 file covered. (100.0%)

355 of 358 relevant lines covered (99.16%)

0.99 hits per line

Relevant lines Covered
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Build:
358 RELEVANT LINES 355 COVERED LINES
0.99 HITS PER LINE
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Recent builds

Builds Branch Commit Type Ran Committer Via Coverage
35441636266 82-workflow-graph Represent a BOSS run as a NOMAD workflow graph Surface the optimization as archive.workflow2: a serial chain of objective evaluations (eval_1 -> ... -> eval_N) ending in the predicted global minimum, with edges drawn by shared section identity (a... Pull #92 19 Sep 2026 12:03PM UTC ndaelman-hu github
99.16
35441633359 78-convergence-figure Add BOSS hyperparameters figure (kernel variance + lengthscales) Surface BOSS' plot_hyperparameters as a second diagnostic: the GP kernel variance and the per-parameter lengthscales versus iteration, read from res['model_params']. Two-panel Plotl... Pull #91 19 Sep 2026 12:03PM UTC ndaelman-hu github
99.09
35441637540 parameter-geometry-metrics Type BOSS parameters as molecular internal coordinates Add GeometricParameter (bond/angle/dihedral + atom indices) and a structure_file reference so each optimized parameter can carry its geometric meaning — the data a structure viewer needs to h... Pull #93 19 Sep 2026 12:02PM UTC ndaelman-hu github
99.16
35441616512 81-inherit-bayesian-optimization Fix CI: resolve nomad-bayesian-optimization and its temporalio import The nomad-bayesian-optimization dependency is not published to any package index, so pip could not resolve it in CI. Install it from git before the plugin in both the test and ... Pull #90 19 Sep 2026 12:02PM UTC ndaelman-hu github
99.01
35204310703 79-slice-name-labels Label parameter-space slices by parameter combination Give ParameterSpaceSlice a `name` quantity, set to the `{x}_vs_{y}` group name at creation and refreshed in `refresh_h5web_labels` (so it follows ELN parameter renames and backfills on entries... Pull #80 17 Sep 2026 09:20AM UTC ndaelman-hu github
99.01
29043775792 main Migrate devcontainer ruff feature to devcontainers-extra (#76) Repoint the ruff devcontainer feature from the deprecated devcontainers-contrib to the maintained devcontainers-extra source. Devcontainer-only; supersedes #71. push 09 Jul 2026 07:19PM UTC web-flow github
99.01
29043589228 chore/devcontainer-ruff-extra Migrate devcontainer ruff feature to devcontainers-extra devcontainers-contrib is deprecated (the original creator deleted the account); devcontainers-extra is the maintained community successor. Repoint the ruff feature there (:2) instead of bum... Pull #76 09 Jul 2026 07:16PM UTC ndaelman-hu github
99.01
29028991462 main Migrate PES computation onto aalto-boss's Mesh API (#75) Replace the hand-rolled query-grid construction in _compute_pes with boss.pp.mesh.Mesh, the data-level API from aalto-boss's 1.14 postprocessing refactor, and bump the pin to aalto-boss>=1.... push 09 Jul 2026 03:21PM UTC web-flow github
99.01
29028767391 migrate-boss-mesh-api Compute mean and variance in a single predict pass evaluate_func supports multi-valued functions: passing model.predict whole (it returns (mean, variance)) evaluates both on the grid in one model.predict call, instead of the two passes the previo... Pull #75 09 Jul 2026 03:18PM UTC ndaelman-hu github
99.01
29013788679 migrate-boss-mesh-api Migrate PES computation onto aalto-boss's Mesh API Replace the hand-rolled query grid (np.meshgrid + np.tile with non-slice dims fixed via res.select('x_glmin')) and the direct reconstruct_model().predict() call with boss.pp.mesh.Mesh, the data-l... Pull #75 09 Jul 2026 11:11AM UTC ndaelman-hu github
99.01
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