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Clinical-Genomics / statina
62%

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DEFAULT BRANCH: master
Repo Added 06 Aug 2021 02:29PM UTC
Files 64
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  • add-filtering-on-dataset-for-plots
  • add-link-to-new-ui
  • add-middleware
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  • integration-branch-novaseqx
  • lower-pf-threshold
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  • patch-ratio-chr-1-22-plot
  • patch-signing-in
  • patch-sort-in-samples-endpoint
  • plot-bug
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  • reduce-number-of-decimals
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17 Apr 2026 08:19AM UTC coverage: 62.206%. Remained the same
24555280404

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github

web-flow
Integration branch for NovaSeqX changes (#250) (major)

### Added

  - Dataset-based filtering for fetal fraction XY and ratio plots — control samples and abnormal classifications are now scoped to the same dataset as the batch being viewed
  - New ratio plot endpoint (/v2/batch/{batch_id}/ratio) with box plots of uncorrected ratios
  - FFY plot endpoint
  - Ratio warnings in plot responses
  - Chr13_Ratio, Chr18_Ratio, and Chr21_Ratio fields in the /v2/sample/ response body
  - Dataset field parsed and stored from the batch request

### Changed

  - Locked passlib and bcrypt versions — bcrypt 4.1.0 removed the about submodule that passlib relies on to detect the backend, causing a runtime error

### Fixed

  - Reduced number of decimals in plot responses
  - Patched Ratio (Chromosomes 1–22) calculation
  - Patched login issue

---------

Co-authored-by: Isak Ohlsson Ångnell <40887124+islean@users.noreply.github.com>
Co-authored-by: islean <isak.ohlsson.angnell@gmail.com>

49 of 77 new or added lines in 13 files covered. (63.64%)

160 existing lines in 8 files now uncovered.

1083 of 1741 relevant lines covered (62.21%)

0.62 hits per line

Relevant lines Covered
Build:
Build:
1741 RELEVANT LINES 1083 COVERED LINES
0.62 HITS PER LINE
Source Files on master
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Recent builds

Builds Branch Commit Type Ran Committer Via Coverage
24555280404 master Integration branch for NovaSeqX changes (#250) (major) ### Added - Dataset-based filtering for fetal fraction XY and ratio plots — control samples and abnormal classifications are now scoped to the same dataset as the batch being viewed - Ne... push 17 Apr 2026 08:19AM UTC web-flow github
62.21
24555280414 master Integration branch for NovaSeqX changes (#250) (major) ### Added - Dataset-based filtering for fetal fraction XY and ratio plots — control samples and abnormal classifications are now scoped to the same dataset as the batch being viewed - Ne... push 17 Apr 2026 08:19AM UTC web-flow github
62.21
24440651503 integration-branch-novaseqx Addressing comments Pull #250 15 Apr 2026 06:51AM UTC RasmusBurge-CG github
62.21
24404177212 integration-branch-novaseqx Patch sorting in summary table (#268) Pull #250 14 Apr 2026 02:18PM UTC web-flow github
62.41
24403879962 patch-sort-in-samples-endpoint Patch sorting in summary table push 14 Apr 2026 02:12PM UTC RasmusBurge-CG github
62.41
24400233981 integration-branch-novaseqx Add filtering on dataset for plots (#264) * Fetal Fraction Preface plot is working * Add filtering for plot Fetal Fraction XY * Patch black * Fix implicit submodule access in fetal_fraction_plot_data Pull #250 14 Apr 2026 12:58PM UTC web-flow github
62.41
24400078175 add-filtering-on-dataset-for-plots Fix implicit submodule access in fetal_fraction_plot_data Pull #264 14 Apr 2026 12:55PM UTC RasmusBurge-CG github
62.41
24395406760 add-filtering-on-dataset-for-plots Patch black Pull #264 14 Apr 2026 11:03AM UTC RasmusBurge-CG github
62.39
24395178802 add-filtering-on-dataset-for-plots Add filtering for plot Fetal Fraction XY Pull #264 14 Apr 2026 10:57AM UTC RasmusBurge-CG github
62.39
24348587256 add-filtering-on-dataset-for-plots Merge branch 'integration-branch-novaseqx' into add-filtering-on-dataset-for-plots Pull #264 13 Apr 2026 02:22PM UTC RasmusBurge-CG github
60.49
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