Clinical-Genomics / statina / 24555280414

62%

Build Type

push

github

Committed by web-flow

Commit Message

Integration branch for NovaSeqX changes (#250) (major)

### Added

  - Dataset-based filtering for fetal fraction XY and ratio plots — control samples and abnormal classifications are now scoped to the same dataset as the batch being viewed
  - New ratio plot endpoint (/v2/batch/{batch_id}/ratio) with box plots of uncorrected ratios
  - FFY plot endpoint
  - Ratio warnings in plot responses
  - Chr13_Ratio, Chr18_Ratio, and Chr21_Ratio fields in the /v2/sample/ response body
  - Dataset field parsed and stored from the batch request

### Changed

  - Locked passlib and bcrypt versions — bcrypt 4.1.0 removed the about submodule that passlib relies on to detect the backend, causing a runtime error

### Fixed

  - Reduced number of decimals in plot responses
  - Patched Ratio (Chromosomes 1–22) calculation
  - Patched login issue

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Co-authored-by: Isak Ohlsson Ångnell <40887124+islean@users.noreply.github.com>
Co-authored-by: islean <isak.ohlsson.angnell@gmail.com>

Coverage Stats

49 of 77 new or added lines in 13 files covered. (63.64%)

1 existing line in 1 file now uncovered.

1083 of 1741 relevant lines covered (62.21%)

0.62 hits per line