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Clear the RuboCop todo and remove .rubocop_todo.yml (#3049)

Fix all 163 offenses the todo file excluded, all of them in specs, so
every cop now applies to the whole codebase and the file can go.

Stubs on the subject become assertions on what the code does: filters
record their calls, `Middleware::Base` callbacks come from subclasses,
verb helpers are checked through the routes they define, and `.call` is
checked by mounting the API, which would replay a recorded request.
Specs reading an instance variable on an endpoint still do, mostly from
`Class.new` APIs, where the variable is not the example's.

Examples that only repeated another one are removed or merged.

Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>

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