28810810400
85%

Ran 06 Jul 2026 05:37PM UTC

Jobs 1

Files 48

Run time 1min

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Committed 06 Jul 2026 05:33PM UTC coverage: 84.744% (+0.1%) from 84.643%

Build # 28810810400

Build Type

push

github

Committed by

web-flow

Commit Message

3.2.0: generalized cell-type annotator (#322)

Supersedes CD4/CD8-only phenotype with a general per-cluster annotator (annotate_cells): background-subtracted signature argmax over CELL_TYPE_SIGNATURES with biology-aware gates (Treg=FOXP3, gd=TRDC-only, MAIT=SLC4A10+KLRB1, NK-vs-CD8). classify_tcell_type kept as a shim; tumor/CTA out of scope. Closes #312.

Coverage Stats

12337 of 14558 relevant lines covered (84.74%)

0.85 hits per line

Coverage Regressions

Lines	Coverage	∆	File
168	65.62	-0.08%	cli.py
7	96.69	0.13%	config.py
6	95.83	0.0%	phenotype.py

Jobs

ID	Job ID	Ran	Files	Coverage
1	python-3.12 - 28810810400.1	06 Jul 2026 05:37PM UTC	48	84.74	GitHub Action Run

pirl-unc / tcrsift / 28810810400
85%

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pirl-unc / tcrsift / 28810810400 85%

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Markdown

Textile

RDoc

HTML

Rst

Coverage Regressions

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pirl-unc / tcrsift / 28810810400
85%

README BADGES
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