28414920554
85%

Ran 30 Jun 2026 01:57AM UTC

Jobs 1

Files 46

Run time 1min

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Committed 30 Jun 2026 01:53AM UTC coverage: 84.677% (+0.09%) from 84.588%

Build # 28414920554

Build Type

push

github

Committed by

web-flow

Commit Message

2.97.0: wire functional panels into til-select branches + figures (#307)

Second of two PRs for #303 (panel definitions landed in 2.96.0). Closes #303.

- run_selection_pipeline: add activation (AIM) + exhaustion branches; the
  exhaustion branch replaces the old enrichment (tumor-reactivity) branch.
  New is_top_/is_branch_/subset_top_ columns for both; is_branch_any /
  is_immunogenic / funnel labels updated. Candidate union now includes the two
  new branches (behavior change). enrichment_genes_preferred /
  --enrichment-genes kept as deprecated aliases that seed exhaustion.
- CLI: add --activation-genes (AIM) and --exhaustion-genes; --enrichment-genes
  deprecated (defaults empty).
- selection_scatter_panels.png is now a real plot_signature_map (cytolytic ×
  exhaustion, candidates highlighted) instead of a placeholder.

Closes #303.

Coverage Stats

11848 of 13992 relevant lines covered (84.68%)

0.85 hits per line

Coverage Regressions

Lines	Coverage	∆	File
246	71.24	0.89%	til_select.py
152	82.3	0.17%	plots.py
15	66.0	0.04%	cli.py

Jobs

ID	Job ID	Ran	Files	Coverage
1	python-3.12 - 28414920554.1	30 Jun 2026 01:57AM UTC	46	84.68	GitHub Action Run

pirl-unc / tcrsift / 28414920554
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