27287941980
80%

Ran 10 Jun 2026 03:49PM UTC

Jobs 1

Files 29

Run time 1min

Badge

Embed ▾

Committed 10 Jun 2026 03:44PM UTC coverage: 79.845% (-0.1%) from 79.956%

Build # 27287941980

Build Type

push

github

Committed by

web-flow

Commit Message

v1.37.0: source CTA gene set from cancerdata (263 genes, not hand-curated 83) (#326)

Our --gene-set CTA was a hand-curated 83-gene subset that didn't match the
authoritative cancerdata package (CTpedia + daSilva2017 candidates -> HPA
reproductive/thymus restriction filter -> 263 expressed, restriction-passing
genes). We were missing 194 (ACTL7A, AKAP4, BRDT, CAGE1, CT47A*, ...).

Add a 'provider:' mechanism to gene_sets.yaml: CTA now delegates to
cancerdata.cta.CTA_gene_names() — single source of truth; the candidate ->
restriction-filter -> override pipeline lives in cancerdata, not duplicated
here. cancerdata is an optional dependency (not yet on PyPI); a missing install
raises a clear error pointing to the git install. Static 'genes:' sets still
work for non-computed panels.

Filed pirl-unc/cancerdata#9 to publish cancerdata to PyPI so it can become a
proper hitlist[cta] dependency.

Coverage Stats

5475 of 6857 relevant lines covered (79.85%)

0.8 hits per line

Coverage Regressions

Lines	Coverage	∆	File
11	82.08	-8.35%	genes.py

Jobs

ID	Job ID	Ran	Files	Coverage
1	27287941980.1	10 Jun 2026 03:49PM UTC	29	79.85	GitHub Action Run

pirl-unc / hitlist / 27287941980
80%

README BADGES
x

Markdown

Textile

RDoc

HTML

Rst

Coverage Regressions

Jobs

Source Files on build 27287941980

pirl-unc / hitlist / 27287941980 80%

README BADGES x

Markdown

Textile

RDoc

HTML

Rst

Coverage Regressions

Jobs

Source Files on build 27287941980

pirl-unc / hitlist / 27287941980
80%

README BADGES
x