27041807643
71%

Ran 05 Jun 2026 09:47PM UTC

Jobs 1

Files 35

Run time 1min

Badge

Embed ▾

Committed 05 Jun 2026 09:46PM UTC coverage: 71.313% (+0.04%) from 71.276%

Build # 27041807643

Build Type

push

github

Committed by

web-flow

Commit Message

Add `tsarina hits --healthy-tissue` per-peptide safety screen (#91)

Surfaces the #76 cta_healthy_tissue_ms_hits helper in the CLI (it was
Python-API-only). The flag short-circuits `tsarina hits` to output the gene's
per-peptide healthy-SOMATIC-tissue MS hits — tissue, allele, allele_set,
provenance, pmid, and a vital_organ flag (against SAFETY_TISSUE_GROUPS) —
instead of the cancer-MS aggregation. Reproductive/thymic hits (expected for
CTAs) are excluded.

Reproduces the issue's deep-dive from the CLI:
  tsarina hits --gene MAGEA4 --healthy-tissue  -> 3 heart hits (vital_organ=True)
  tsarina hits --gene PRAME  --healthy-tissue  -> 1 clean blood hit

Tests for the flag + no-hits case; existing handle() Namespace builders updated
with the new field. Docs updated. Version 1.4.9 -> 1.5.0.

Coverage Stats

2471 of 3465 relevant lines covered (71.31%)

0.71 hits per line

Coverage Regressions

Lines	Coverage	∆	File
61	56.85	1.05%	cli_hits.py

Jobs

ID	Job ID	Ran	Files	Coverage
1	27041807643.1	05 Jun 2026 09:47PM UTC	35	71.31	GitHub Action Run

pirl-unc / tsarina / 27041807643
71%

README BADGES
x

Markdown

Textile

RDoc

HTML

Rst

Coverage Regressions

Jobs

Source Files on build 27041807643

pirl-unc / tsarina / 27041807643 71%

README BADGES x

Markdown

Textile

RDoc

HTML

Rst

Coverage Regressions

Jobs

Source Files on build 27041807643

pirl-unc / tsarina / 27041807643
71%

README BADGES
x