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pirl-unc / tcrsift / 26846403025
82%

Build:
DEFAULT BRANCH: main
Ran 02 Jun 2026 08:36PM UTC
Jobs 4
Files 34
Run time 1min
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02 Jun 2026 08:34PM UTC coverage: 81.553% (+0.03%) from 81.522%
26846403025

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Scoring hardening (#144): exclude receptor genes, per-condition z-score baseline (#151)

- Reject signatures containing TCR/Ig receptor segment genes
  (TRAV/TRBV/.../IGHV/IGKC...) — RECEPTOR_GENE_RE + is_receptor_gene +
  strip_receptor_genes. Receptor transcripts are clonally confounded and
  must never enter an expression signature.
- score_signature gains a 'groups' param: per-condition z-score baseline
  (each gene standardized within group), mutually exclusive with background.
- build_signature_methods gains 'background_by' to derive groups from an
  obs column (e.g. sample).
- Bump 2.20.0.

7953 of 9752 relevant lines covered (81.55%)

3.26 hits per line

Coverage Regressions

Lines Coverage ∆ File
8
95.35
0.48% signature_methods.py
Jobs
ID Job ID Ran Files Coverage
1 python-3.12 - 26846403025.1 02 Jun 2026 08:36PM UTC 34
81.54
GitHub Action Run
2 python-3.10 - 26846403025.2 02 Jun 2026 08:36PM UTC 34
81.54
GitHub Action Run
3 python-3.11 - 26846403025.3 02 Jun 2026 08:36PM UTC 34
81.54
GitHub Action Run
4 python-3.9 - 26846403025.4 02 Jun 2026 08:36PM UTC 34
81.5
GitHub Action Run
Source Files on build 26846403025
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  • Changed 1
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  • Coverage Changed 1
Coverage ∆ File Lines Relevant Covered Missed Hits/Line
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