26846403025
82%

Ran 02 Jun 2026 08:36PM UTC

Jobs 4

Files 34

Run time 1min

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Committed 02 Jun 2026 08:34PM UTC coverage: 81.553% (+0.03%) from 81.522%

Build # 26846403025

Build Type

push

github

Committed by

web-flow

Commit Message

Scoring hardening (#144): exclude receptor genes, per-condition z-score baseline (#151)

- Reject signatures containing TCR/Ig receptor segment genes
  (TRAV/TRBV/.../IGHV/IGKC...) — RECEPTOR_GENE_RE + is_receptor_gene +
  strip_receptor_genes. Receptor transcripts are clonally confounded and
  must never enter an expression signature.
- score_signature gains a 'groups' param: per-condition z-score baseline
  (each gene standardized within group), mutually exclusive with background.
- build_signature_methods gains 'background_by' to derive groups from an
  obs column (e.g. sample).
- Bump 2.20.0.

Coverage Stats

7953 of 9752 relevant lines covered (81.55%)

3.26 hits per line

Coverage Regressions

Lines	Coverage	∆	File
8	95.35	0.48%	signature_methods.py

Jobs

ID	Job ID	Ran	Files	Coverage
1	python-3.12 - 26846403025.1	02 Jun 2026 08:36PM UTC	34	81.54	GitHub Action Run
2	python-3.10 - 26846403025.2	02 Jun 2026 08:36PM UTC	34	81.54	GitHub Action Run
3	python-3.11 - 26846403025.3	02 Jun 2026 08:36PM UTC	34	81.54	GitHub Action Run
4	python-3.9 - 26846403025.4	02 Jun 2026 08:36PM UTC	34	81.5	GitHub Action Run

pirl-unc / tcrsift / 26846403025
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pirl-unc / tcrsift / 26846403025 82%

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