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pirl-unc / hitlist / 25187740497
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DEFAULT BRANCH: main
Ran 30 Apr 2026 08:31PM UTC
Jobs 1
Files 27
Run time 1min
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30 Apr 2026 08:29PM UTC coverage: 70.764% (-0.008%) from 70.772%
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v1.30.18: Surface severity tiers in qc.discrepancies + CLI flag (#204)

Follows up v1.30.17 (#201) by exposing the new four-tier
mhc_class_label_severity through both the QC reports and the export CLI.

qc.discrepancies adds two new columns alongside the existing
suspect_class_label_n:

- borderline_class_label_n  -- bulged class-I (13-14aa) or short
                               class-II (8-10aa); uncommon-but-real
                               biology, NOT counted as suspect.
- implausible_class_label_n -- class-I >=18aa or <=7aa,
                               class-II <=4 or >=31aa; almost always
                               curation drift.

Together they let a curator distinguish "this study has a lot of
bulged peptides" (legitimate) from "this study has rows where the
class label is clearly wrong" (action item).

CLI: hitlist export observations gains
--exclude-class-label-implausible alongside the existing
--exclude-class-label-suspect. The new flag drops only the
implausible tier, retaining bulged class-I 15-17aa peptides for
analyses that want them.

3638 of 5141 relevant lines covered (70.76%)

0.71 hits per line

Coverage Regressions

Lines Coverage ∆ File
80
55.32
0.06% cli.py
75
81.53
-0.11% export.py
9
92.26
-1.03% qc.py
Jobs
ID Job ID Ran Files Coverage
1 25187740497.1 30 Apr 2026 08:31PM UTC 27
70.76
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Source Files on build 25187740497
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  • Coverage Changed 3
Coverage ∆ File Lines Relevant Covered Missed Hits/Line
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