24795474037
80%

Ran 22 Apr 2026 06:29PM UTC

Jobs 1

Files 21

Run time 1min

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Committed 22 Apr 2026 06:27PM UTC coverage: 50.061% (-0.08%) from 50.137%

Build # 24795474037

Build Type

push

github

Committed by

web-flow

Commit Message

v1.15.4: Atomic-rename rebuild so mid-build queries stay coherent (#105) (#126)

Keeps observations.parquet / binding.parquet untouched throughout the
build — annotation happens in memory, then the final annotated frames
are written to `.partial` and renamed over the canonical path in one
shot. Readers calling load_observations(gene_name=...) during a
rebuild continue to see whatever was on disk before the build started,
instead of hitting the confusing "Gene filtering requires a
mappings-built index. Run: hitlist data build" error.

- New helper `_atomic_write_parquet` writes to `.partial`, then renames.
- `build_peptide_mappings()` gains `obs_override` / `binding_override`
  params so the builder can pass the in-memory frames directly,
  avoiding the need for the canonical parquets to exist mid-build.
- After the atomic rename, the builder refreshes
  `peptide_mappings_meta.json` with the new parquet fingerprints so
  standalone `build_peptide_mappings()` calls still hit the cache
  correctly.

Fixes #105.

Coverage Stats

1647 of 3290 relevant lines covered (50.06%)

0.5 hits per line

Coverage Regressions

Lines	Coverage	∆	File
143	51.19	-0.02%	builder.py
58	16.26	-0.41%	mappings.py

Jobs

ID	Job ID	Ran	Files	Coverage
1	24795474037.1	22 Apr 2026 06:29PM UTC	21	50.06	GitHub Action Run

pirl-unc / hitlist / 24795474037
80%

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