24685829802
80%

Ran 20 Apr 2026 07:24PM UTC

Jobs 1

Files 21

Run time 1min

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Committed 20 Apr 2026 07:23PM UTC coverage: 45.555% (+0.07%) from 45.486%

Build # 24685829802

Build Type

push

github

Committed by

web-flow

Commit Message

v1.12.1: guard classify_allele_resolution against Pair[Gene, Gene] (#92)

mhcgnomes parses locus-only pair strings (e.g. "HLA-DRA/DRB1",
"HLA-DPA1*01:03/DPB1") into Pair[Gene, Gene] or mixed Pair[Allele, Gene].
Gene has no allele_fields attribute; the prior isinstance dispatch
crashed with AttributeError during hitlist data build, blocking the
cached observations index and forcing downstream tsarina hits queries
to the 2-minute raw-CSV fallback.

Fix: guard each .allele_fields access with isinstance(..., Allele).
Pair with a Gene-typed leg falls through to "unresolved" (a locus-only
side can't clear the one-digit threshold, so the pair's min resolution
is below two-digit).

Regression test: classify_allele_resolution("HLA-DRA/DRB1") and
classify_allele_resolution("HLA-DPA1*01:03/DPB1") both return
"unresolved" without crashing.

Closes #87. 228 passed, 1 skipped.

Coverage Stats

1317 of 2891 relevant lines covered (45.56%)

0.46 hits per line

Coverage Regressions

Lines	Coverage	∆	File
28	83.9	0.68%	curation.py

Jobs

ID	Job ID	Ran	Files	Coverage
1	24685829802.1	20 Apr 2026 07:24PM UTC	21	45.56	GitHub Action Run

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