24685067809
80%

Ran 20 Apr 2026 07:06PM UTC

Jobs 1

Files 21

Run time 1min

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Committed 20 Apr 2026 07:05PM UTC coverage: 45.486% (+0.5%) from 44.962%

Build # 24685067809

Build Type

push

github

Committed by

web-flow

Commit Message

v1.12.0: aggregate_per_pmhc_with_refs — per-pMHC aggregation with provenance (#91)

Adds a third canonical aggregation to hitlist.aggregate that sits between
aggregate_per_peptide (per-peptide, keeps provenance, loses allele
granularity) and aggregate_per_pmhc (per-(peptide, allele), lean, loses
provenance). Keeps allele granularity AND surfaces the provenance columns
reviewers want on a pMHC row: reference count, PMID list, distinct
tissues / diseases / cell lines, cancer / healthy-tissue source flags,
mono-allelic hit count.

Output columns follow hitlist's ms_pmhc_* prefix convention. Only peptide
+ mhc_restriction are required; all other columns are conditional on the
input so both the cached-observations fast path and the raw-scan slow
path produce valid output. PMIDs sort numerically via a new
_join_unique_numeric helper.

Upstreams tsarina v0.9.0's local _aggregate_refs. tsarina will drop the
duplicate in a follow-up PR once this ships.

Closes #88. 227 passed, 1 skipped.

Coverage Stats

1315 of 2891 relevant lines covered (45.49%)

0.45 hits per line

Coverage Regressions

Lines	Coverage	∆	File
5	93.59	-1.97%	aggregate.py

Jobs

ID	Job ID	Ran	Files	Coverage
1	24685067809.1	20 Apr 2026 07:06PM UTC	21	45.49	GitHub Action Run

pirl-unc / hitlist / 24685067809
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