24607246249
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Ran 18 Apr 2026 02:56PM UTC

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Files 19

Run time 1min

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Committed 18 Apr 2026 02:55PM UTC coverage: 43.91% (+0.3%) from 43.629%

Build # 24607246249

Build Type

push

github

Committed by

web-flow

Commit Message

v1.10.0: add load_all_evidence() union helper (#47) (#74)

Completes hitlist#47.  The binding.parquet index already shipped (1.8.x
built it; load_binding() reads it); what was missing was the union
helper so downstream consumers that explicitly want both kinds of
evidence don't have to hand-roll a pd.concat with an evidence_kind
column.

New public function:

    load_all_evidence(mhc_class=..., species=..., source=...,
                     mhc_restriction=..., gene_name=..., gene_id=...,
                     peptide=..., serotype=..., columns=...)

- Applies the same filters symmetrically to load_observations() and
  load_binding().
- Tags each row with evidence_kind ∈ {"ms", "binding"}.
- Concatenates via pd.concat(..., ignore_index=True, sort=False).
- Missing indexes are silently skipped — the result is whatever has
  been built (both, one, or neither).  Returns an empty frame with
  the evidence_kind column if neither is built (does NOT raise
  FileNotFoundError, unlike the two narrower loaders).

+3 tests: union+filter parity, both-missing → empty, MS-only-built
falls through cleanly.  202 passed, 1 skipped.

Downstream:
- Unblocks tsarina#4 — tsarina's --include-binding-assays on the
  cached path can switch from the current warning to load_all_evidence()
  and actually honor the flag.  Follow-up PR.

Coverage Stats

1233 of 2808 relevant lines covered (43.91%)

0.44 hits per line

Coverage Regressions

Lines	Coverage	∆	File
8	91.49	1.49%	observations.py

Jobs

ID	Job ID	Ran	Files	Coverage
1	24607246249.1	18 Apr 2026 02:56PM UTC	19	43.91	GitHub Action Run

pirl-unc / hitlist / 24607246249
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