24033119074
80%

Ran 06 Apr 2026 01:12PM UTC

Jobs 1

Files 11

Run time 1min

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Committed 06 Apr 2026 01:12PM UTC coverage: 37.903% (+0.7%) from 37.202%

Build # 24033119074

Build Type

push

github

Committed by

web-flow

Commit Message

Cache mhcgnomes, add mhc_species, fix 721.221 mono-allelic detection (#5)

Performance: cache mhcgnomes.parse() with lru_cache — ~300 unique
allele strings across 3M+ rows eliminates redundant parsing.

Species model: new mhc_species column and scan() filter derived from
mhcgnomes species detection. Supersedes hla_only for species-aware
filtering. Enables identifying non-human MHC on human host.

721.221 fix: IEDB annotates 721.221 transfectants as cell_name="B cell".
Added PMID-level mono_allelic_host overrides for PMIDs 28228285,
31844290, 31092671, 28514659 so these major immunopeptidome studies
are correctly flagged as mono-allelic.

Serotype map: prefer broad serotypes (A2) over IEF sub-serotypes
(A2.1) from mhcgnomes 3.20.0 new entries.

Coverage Stats

376 of 992 relevant lines covered (37.9%)

0.38 hits per line

Coverage Regressions

Lines	Coverage	∆	File
46	74.63	-0.09%	curation.py
25	22.88	-0.8%	scanner.py

Jobs

ID	Job ID	Ran	Files	Coverage
1	24033119074.1	06 Apr 2026 01:12PM UTC	11	37.9	GitHub Action Run

pirl-unc / hitlist / 24033119074
80%

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