21149391068
70%

Ran 19 Jan 2026 07:33PM UTC

Jobs 4

Files 21

Run time 1min

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Committed 19 Jan 2026 07:32PM UTC coverage: 59.724% (+0.3%) from 59.439%

Build # 21149391068

Build Type

push

github

Committed by

iskandr

Commit Message

Add multi-format TIL input support and multi-sample matching

- Add til_csv and til_h5ad fields to Sample model for flexible TIL data input
- Add load_til_data() with support for h5ad, CSV, and VDJ directory formats
- Auto-detect CDR3 column naming conventions in CSV files
- Update match_til() to support multiple TIL samples via dict input
- Add per-sample output columns for multi-sample matching
- Update CLI match-til with --sample-sheet, --til-h5ad, --til-csv, --til-vdj-dir
- Add validate_match_til_args() for CLI validation
- Update documentation with new TIL matching options
- Add comprehensive tests for all new functionality

Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>

Run Details

2340 of 3918 relevant lines covered (59.72%)

2.39 hits per line

Uncovered Existing Lines

Lines	Coverage	∆	File
2	57.22	3.24%	validation.py
26	85.56	-14.44%	til.py
30	84.69	-0.22%	sample_sheet.py
169	41.83	-1.59%	cli.py

Jobs

ID	Job ID	Ran	Files	Coverage
1	python-3.9 - 21149391068.1	19 Jan 2026 07:33PM UTC	21	59.67	GitHub Action Run
2	python-3.10 - 21149391068.2	19 Jan 2026 07:33PM UTC	21	59.71	GitHub Action Run
3	python-3.12 - 21149391068.3	19 Jan 2026 07:33PM UTC	21	59.71	GitHub Action Run
4	python-3.11 - 21149391068.4	19 Jan 2026 07:33PM UTC	21	59.71	GitHub Action Run

pirl-unc / tcrsift / 21149391068
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pirl-unc / tcrsift / 21149391068 70%

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pirl-unc / tcrsift / 21149391068
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