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Ran 19 Jan 2026 07:34PM UTC

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Committed 19 Jan 2026 07:32PM UTC coverage: 59.673% (+0.3%) from 59.386%

Job # 21149391068.1

Build Type

push

github

Committed by

iskandr

Commit Message

Add multi-format TIL input support and multi-sample matching

- Add til_csv and til_h5ad fields to Sample model for flexible TIL data input
- Add load_til_data() with support for h5ad, CSV, and VDJ directory formats
- Auto-detect CDR3 column naming conventions in CSV files
- Update match_til() to support multiple TIL samples via dict input
- Add per-sample output columns for multi-sample matching
- Update CLI match-til with --sample-sheet, --til-h5ad, --til-csv, --til-vdj-dir
- Add validate_match_til_args() for CLI validation
- Update documentation with new TIL matching options
- Add comprehensive tests for all new functionality

Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>

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